RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CCDC190Q86UF4 302 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 TMEM17Q86X19 198 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 H1FOOQ8IZA3 346 aaPredicted RBP8.15□□□□□ -1.1
USP3-216ENST00000559873 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.15□□□□□ -1.1
USP3-216ENST00000559873 OR6Q1Q8NGQ2 317 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 OR52I2Q8NH67 350 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 ZFAND2BQ8WV99 257 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 SNAPC3Q92966 411 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 BORCS5Q969J3 196 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 ZNF48Q96MX3 618 aaPredicted RBP8.15□□□□□ -1.1
USP3-216ENST00000559873 SSX3Q99909 188 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 C11orf54Q9H0W9 315 aaPredicted RBP8.15□□□□□ -1.1
USP3-216ENST00000559873 EHFQ9NZC4 300 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 MTFP1Q9UDX5 166 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 VPREB3Q9UKI3 123 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 SAA2-SAA4A0A096LPE2 208 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 LY6LH3BQJ8 138 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 GSTZ1O43708 216 aaPredicted RBP8.14□□□□□ -1.11
USP3-216ENST00000559873 LANCL1O43813 399 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 FCER2P06734 321 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 RNASE1P07998 156 aaKnown RBP8.14□□□□□ -1.11
USP3-216ENST00000559873 OR8U9P0C7N5 309 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 SAA2P0DJI9 122 aaPredicted RBP8.14□□□□□ -1.11
USP3-216ENST00000559873 OR5H8P0DN80 308 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 HLA-DMAP28067 261 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 ETV6P41212 452 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 IER3P46695 156 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 LUMP51884 338 aaPredicted RBP8.14□□□□□ -1.11
USP3-216ENST00000559873 ZNF134P52741 427 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 AP3S2P59780 193 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 RPL15P61313 204 aaKnown RBP8.14□□□□□ -1.11
USP3-216ENST00000559873 HERV-K104P61576 105 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 DGCR2P98153 550 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 SLC9A3R2Q15599 337 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 PLA1AQ53H76 456 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 PYDC2Q56P42 97 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 RNASE10Q5GAN6 216 aaKnown RBP8.14□□□□□ -1.11
USP3-216ENST00000559873 UTF1Q5T230 341 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 ZNF833PQ6ZTB9 187 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 C5orf24Q7Z6I8 188 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 OR8U1Q8NH10 309 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 C17orf50Q8WW18 174 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 CAPSLQ8WWF8 208 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 AKR1E2Q96JD6 320 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 OR2D2Q9H210 308 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 OR2W1Q9Y3N9 320 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 SOX21Q9Y651 276 aaPredicted RBP8.14□□□□□ -1.11
USP3-216ENST00000559873 V9GYH0 126 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 ATRQ13535 2644 aa8.14□□□□□ -1.11
USP3-216ENST00000559873 NIPBLQ6KC79 2804 aaeCLIP8.13□□□□□ -1.11
USP3-216ENST00000559873 IGHV1-3A0A0C4DH29 117 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 A0A1W2PPI3 338 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 PPYP01298 95 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 IGHV4-59P01825 116 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 PMP2P02689 132 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 IFNA6P05013 189 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 FAM106CPP0CH98 169 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 NFYAP23511 347 aaPredicted RBP8.13□□□□□ -1.11
USP3-216ENST00000559873 FCGR2CP31995 323 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 HRH1P35367 487 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 FAUP35544 74 aaKnown RBP8.13□□□□□ -1.11
USP3-216ENST00000559873 INPP1P49441 399 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 TSPAN5P62079 268 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 UBA52P62987 128 aaKnown RBP8.13□□□□□ -1.11
USP3-216ENST00000559873 ZNF45Q02386 682 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 CBX3Q13185 183 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 DYRK1AQ13627 763 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 MEF2DQ14814 521 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 VAX1Q5SQQ9 334 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 LDLRAD2Q5SZI1 272 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 TRIQKQ629K1 86 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 FAM53AQ6NSI3 398 aaPredicted RBP8.13□□□□□ -1.11
USP3-216ENST00000559873 OVCH2Q7RTZ1 564 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 C16orf82Q7Z2V1 217 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 MOB3BQ86TA1 216 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 Q8N402 240 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 ARRDC1Q8N5I2 433 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 TMEM229BQ8NBD8 167 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 OR6F1Q8NGZ6 308 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 RTN4IP1Q8WWV3 396 aaPredicted RBP8.13□□□□□ -1.11
USP3-216ENST00000559873 S100ZQ8WXG8 99 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 ST6GALNAC6Q969X2 333 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 ABHD14BQ96IU4 210 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 AGMATQ9BSE5 352 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 TCF19Q9Y242 345 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 RBMX2Q9Y388 322 aaKnown RBP8.13□□□□□ -1.11
USP3-216ENST00000559873 NF1P21359 2839 aa8.13□□□□□ -1.11
USP3-216ENST00000559873 MXRA5Q9NR99 2828 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 OR5H14A6NHG9 310 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 TIMM23O14925 209 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 TUSC2O75896 110 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 VENTXO95231 258 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 APOA2P02652 100 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 CRYBA1P05813 215 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 S100GP29377 79 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 REG1BP48304 166 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 RAB13P51153 203 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 HES1Q14469 280 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 MSMO1Q15800 293 aa8.12□□□□□ -1.11
USP3-216ENST00000559873 DHRS7BQ6IAN0 325 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms