RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TRAPPC2LQ9UL33 140 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 TP53TG5Q9Y2B4 290 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 A8MWP6 167 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 NGFP01138 241 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 LHX2P50458 406 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 Q0VFX4 171 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 SSPNQ14714 243 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 TMEM249Q2WGJ8 235 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF66Q6ZN08 573 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 DRAM1Q8N682 238 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 OR2T10Q8NGZ9 312 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 NEIL1Q96FI4 390 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-231ENST00000557433 IMMP2LQ96T52 175 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 NDUFAF3Q9BU61 184 aa13.76□□□□□ -0.21
SHMT2-231ENST00000557433 C17orf112F2Z3M2 114 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 CCL2P13500 99 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF16P17020 682 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-231ENST00000557433 VWC2Q2TAL6 325 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 PMS2CLQ68D20 193 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 TUSC5Q8IXB3 177 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 OR10G9Q8NGN4 311 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 OR10G7Q8NGN6 311 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 RPUSD4Q96CM3 377 aaKnown RBP13.75□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF488Q96MN9 340 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 PRO1933Q9H354 126 aa13.75□□□□□ -0.21
SHMT2-231ENST00000557433 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-231ENST00000557433 A0A1B0GV90 55 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 ST8SIA5O15466 376 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 IGKV1D-33P01593 117 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 IGKV1-33P01594 117 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 P0C879 139 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 OTX2P32243 289 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 CLDN18P56856 261 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 CATR1Q13166 79 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 BEND4Q6ZU67 534 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF645Q8N7E2 425 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF709Q8N972 641 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 OR10P1Q8NGE3 313 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 NANOS1Q8WY41 292 aaKnown RBP13.74□□□□□ -0.21
SHMT2-231ENST00000557433 XIRP2A4UGR9 3374 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 WDR1O75083 606 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 JMJD7P0C870 316 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 IDH3GP51553 393 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-231ENST00000557433 NUBP1P53384 320 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 ERVK11-1P61568 191 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 OR8G2PQ6IF36 304 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 ACSM6Q6P461 480 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 OR4F5Q8NH21 305 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 OR4F4Q96R69 305 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF703Q9H7S9 590 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-231ENST00000557433 KCNIP1Q9NZI2 227 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 OR6C3Q9NZP0 311 aa13.74□□□□□ -0.21
SHMT2-231ENST00000557433 PINLYPA6NC86 204 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 LRRC30A6NM36 301 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 SH2D1BO14796 132 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 OR2H2O95918 312 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 GYPAP02724 150 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF146Q15072 292 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 C9orf135Q5VTT2 229 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 C17orf78Q8N4C9 275 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 DIRC2Q96SL1 478 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 CHODLQ9H9P2 273 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 NCKAP5O14513 1909 aa13.73□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF503-AS2A6NEH8 195 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 PDE6DO43924 150 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 CD55P08174 381 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 GZMHP20718 246 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 TUBG1P23258 451 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 ERVS71-1P61550 626 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 IQCJQ1A5X6 159 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 FFAR4Q5NUL3 377 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 FIP1L1Q6UN15 594 aaKnown RBP13.72□□□□□ -0.21
SHMT2-231ENST00000557433 FAM180AQ6UWF9 173 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 OR2M7Q8NG81 312 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 TXNDC17Q9BRA2 123 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 PCGF1Q9BSM1 259 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 SLC25A22Q9H936 323 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 PMS2P5A8MQ11 134 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 RAB29O14966 203 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 TMPRSS2O15393 492 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 RAC2P15153 192 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 SSX2Q16385 188 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 ZNF664Q8N3J9 261 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 WDR31Q8NA23 367 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 OR1K1Q8NGR3 316 aa13.72□□□□□ -0.21
SHMT2-231ENST00000557433 A0A1W2PPQ1 181 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 RHBDL1O75783 438 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 CA6P23280 308 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 WNT5AP41221 380 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 GNB2P62879 340 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 HNF4GQ14541 408 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 SLC10A1Q14973 349 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 DCAF12Q5T6F0 453 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 TDHQ8IZJ6 230 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 RAB1CQ92928 201 aa13.71□□□□□ -0.21
SHMT2-231ENST00000557433 A0A1W2PR80 420 aa13.7□□□□□ -0.22
SHMT2-231ENST00000557433 TMEM30CPA0ZSE6 113 aa13.7□□□□□ -0.22
SHMT2-231ENST00000557433 F6UZH7 168 aa13.7□□□□□ -0.22
SHMT2-231ENST00000557433 SIRPB1O00241 398 aa13.7□□□□□ -0.22
SHMT2-231ENST00000557433 MLNRO43193 412 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms