RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 GRPP07492 148 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 IL2RGP31785 369 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 RND2P52198 227 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 GUSBP1Q15486 140 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 ZNF674Q2M3X9 581 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 LCN15Q6UWW0 184 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 DHRS13Q6UX07 377 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 FAM214BQ7L5A3 538 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 C1orf162Q8NEQ5 155 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-222ENST00000555774 OR51M1Q9H341 326 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 VSIRQ9H7M9 311 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 LAMP3Q9UQV4 416 aa11.35□□□□□ -0.59
SHMT2-222ENST00000555774 MAP1LC3B2A6NCE7 125 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 CLDN1O95832 211 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 MBP02144 154 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 OR3A1P47881 315 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 ALKBH6Q3KRA9 238 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 DEFB123Q8N688 67 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 OR1L1Q8NH94 360 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 KLF14Q8TD94 323 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-222ENST00000555774 NINJ1Q92982 152 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 TMEM147Q9BVK8 224 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 MRPL37Q9BZE1 423 aaKnown RBP11.34□□□□□ -0.59
SHMT2-222ENST00000555774 MAP1LC3BQ9GZQ8 125 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 CTDSP1Q9GZU7 261 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 OR2D2Q9H210 308 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 OBP2BQ9NPH6 170 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-222ENST00000555774 IFNL4K9M1U5 179 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 PSPNO60542 156 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 FABP1P07148 127 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 CXCL1P09341 107 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 CD82P27701 267 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 HOXC12P31275 282 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 CDX1P47902 265 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-222ENST00000555774 TNFSF10P50591 281 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 ERVFRD-1P60508 538 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 ZNF66Q6ZN08 573 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 VASH2Q86V25 355 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 C1orf87Q8N0U7 546 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 UBALD1Q8TB05 177 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 CIB3Q96Q77 187 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-222ENST00000555774 TAAR6Q96RI8 345 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 AGMATQ9BSE5 352 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 SDF2L1Q9HCN8 221 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 NIT2Q9NQR4 276 aa11.34□□□□□ -0.59
SHMT2-222ENST00000555774 UBE2L5PA0A1B0GUS4 154 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 LRRC30A6NM36 301 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 CLDN34H7C241 214 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 M0R296 226 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 RAB29O14966 203 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 IGKV3-15P01624 115 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 HBZP02008 142 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 COX5AP20674 150 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 S100PP25815 95 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 MPV17P39210 176 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 ZNF343Q6P1L6 599 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 TRAT1Q6PIZ9 186 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 SSX7Q7RTT5 188 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 FAM216AQ8WUB2 273 aa11.33□□□□□ -0.6
SHMT2-222ENST00000555774 LYZL6O75951 148 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 CLDN14O95500 239 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 LY86O95711 162 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 KITLGP21583 273 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 PAX5Q02548 391 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 ACP7Q6ZNF0 438 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 C11orf53Q8IXP5 236 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 LURAP1Q96LR2 239 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 SLC39A9Q9NUM3 307 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 TINAGQ9UJW2 476 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 R4GN57 208 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 TNRC18O15417 2968 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-222ENST00000555774 MLNRO43193 412 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 C1orf174Q8IYL3 243 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 WDR31Q8NA23 367 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 GSN-AS1Q9NRJ2 163 aa11.32□□□□□ -0.6
SHMT2-222ENST00000555774 TGIF2-C20orf24A0A0A6YYL0 155 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 ODAMA1E959 279 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 RAMP3O60896 148 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 OPN1MWP04001 364 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 OPN1MW2P0DN77 364 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 OPN1MW3P0DN78 364 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 CEBPDP49716 269 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-222ENST00000555774 FGF8P55075 233 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-222ENST00000555774 RPL30P62888 115 aaKnown RBP11.31□□□□□ -0.6
SHMT2-222ENST00000555774 MZT1Q08AG7 82 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 ATP1A1-AS1Q5TC04 95 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 OR52L2PQ8NGH6 319 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 LHX4Q969G2 390 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 C5orf30Q96GV9 206 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 COQ2Q96H96 371 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 TRIB1Q96RU8 372 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 ELOA3CA0A087WX78 387 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-222ENST00000555774 CTXND1A0A1B0GTU2 59 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 CEBPZOSA8MTT3 80 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 CYB5BO43169 146 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 ZNF737O75373 536 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 G6PCP35575 357 aa11.31□□□□□ -0.6
SHMT2-222ENST00000555774 ELLP55199 621 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-222ENST00000555774 VWC2Q2TAL6 325 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms