RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 OR5H14A6NHG9 310 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 RAB27BO00194 218 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 MFNGO00587 321 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 RRP9O43818 475 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 NDUFA3O95167 84 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 DUS4LO95620 317 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 HLA-DRB1P01911 266 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 SOX6P35712 828 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 SERPINB10P48595 397 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 F2RL1P55085 397 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 SRSF7Q16629 238 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 C22orf42Q6IC83 251 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 TEX38Q6PEX7 206 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 Q6ZS49 121 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 ZNF329Q86UD4 541 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 TPRA1Q86W33 373 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 NR2C2APQ86WQ0 139 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 C1QL4Q86Z23 238 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 NPBQ8NG41 125 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 PHF21AQ96BD5 680 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 RAB3CQ96E17 227 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 STUB1Q9UNE7 303 aa12.63□□□□□ -0.39
CCDC88C-209ENST00000554872 A0A1W2PRX2 142 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 TRDCB7Z8K6 153 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 ELANEP08246 267 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 OR5H8P0DN80 308 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 HIST1H1DP16402 221 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 GADD45AP24522 165 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 PSMB9P28065 219 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 OR3A3P47888 321 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 ACTBP60709 375 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 PLA2G7Q13093 441 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 FOXE3Q13461 319 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 KIR2DS1Q14954 304 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 ARL6IP1Q15041 203 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 MMDQ15546 238 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 KCTD21Q4G0X4 260 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 OR5AN1Q8NGI8 311 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 OR4A4PQ8NGN8 299 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 OR10R2Q8NGX6 335 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 SETD6Q8TBK2 473 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 RCC1LQ96I51 464 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 CABLES2Q9BTV7 478 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 CENPOQ9BU64 300 aa12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 TXNL4BQ9NX01 149 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-209ENST00000554872 IGKV1-6A0A0C4DH72 117 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 METTL21EPA6NDL7 271 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 LINC01548A6NM66 108 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 NOTOA8MTQ0 251 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 ST8SIA5O15466 376 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 RBBP9O75884 186 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 IGHG4P01861 327 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 PF4P02776 101 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 FCGR3AP08637 254 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 SCTP09683 121 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 CD33P20138 364 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 MC5RP33032 325 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 PNLIPRP3Q17RR3 467 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 ETV3LQ6ZN32 361 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 LINC00482Q8N8I6 264 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 RNF5Q99942 180 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 HSPB9Q9BQS6 159 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 PARP12Q9H0J9 701 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 C11orf54Q9H0W9 315 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 OR1A1Q9P1Q5 309 aa12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 ZNF107Q9UII5 783 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-209ENST00000554872 NBR2O15453 112 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 HSPA12AO43301 675 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 SCGNO76038 276 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 CD3GP09693 182 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 CT45A6P0DMU7 189 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 CT45A5P0DMU8 189 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 CT45A7P0DMV0 189 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 CEACAM6P40199 344 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 CRIP2P52943 208 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 SCAND1P57086 179 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 MRPS15P82914 257 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 C5orf64Q2M2E5 130 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 MOGAT2Q3SYC2 334 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 OXLD1Q5BKU9 147 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 KHDC1LQ5JSQ8 128 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 MYOZ3Q8TDC0 251 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 NECAP2Q9NVZ3 263 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 GAB2Q9UQC2 676 aa12.6□□□□□ -0.39
CCDC88C-209ENST00000554872 H0YJW9 148 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 FABP7O15540 132 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 TMEM127O75204 238 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 CDX1P47902 265 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 THBS3P49746 956 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 RPL39P5Q59GN2 51 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 P2RX4Q99571 388 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 GPR61Q9BZJ8 451 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 LINC00527Q9UJ94 153 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 SSR3Q9UNL2 185 aa12.59□□□□□ -0.39
CCDC88C-209ENST00000554872 TRBV6-7A0A0A0MS04 114 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 PROP1O75360 226 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 SPDEFO95238 335 aa12.58□□□□□ -0.4
CCDC88C-209ENST00000554872 VDAC1P21796 283 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms