RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CENPVQ7Z7K6 275 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 TPRA1Q86W33 373 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 Q8N9W7 124 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 OR2AK2Q8NG84 335 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 OR2T10Q8NGZ9 312 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 NABP2Q9BQ15 211 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 AGMATQ9BSE5 352 aa9.17□□□□□ -0.94
CCDC88C-208ENST00000554165 PLXNB1O43157 2135 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 M0QZK8 103 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 PROP1O75360 226 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 RGS11O94810 467 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 C2orf68Q2NKX9 166 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 LY6G6FQ5SQ64 297 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 IDNKQ5T6J7 187 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 ZNF833PQ6ZTB9 187 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 ZNF329Q86UD4 541 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 DTX3Q8N9I9 347 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 DRAXINQ8NBI3 349 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 PTX4Q96A99 478 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 SLC25A38Q96DW6 304 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 HSPB9Q9BQS6 159 aa9.16□□□□□ -0.94
CCDC88C-208ENST00000554165 METTL21EPA6NDL7 271 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 TRIM64CA6NLI5 447 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 BET1O15155 118 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 FABP7O15540 132 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 HSPA12AO43301 675 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 FGF16O43320 207 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 AIREO43918 545 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 SMIM18P0DKX4 95 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 CT45A6P0DMU7 189 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 CT45A5P0DMU8 189 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 CT45A7P0DMV0 189 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 CD83Q01151 205 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 ARFRP1Q13795 201 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 FAM131AQ6UXB0 335 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 C1QL4Q86Z23 238 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 NUDCD2Q8WVJ2 157 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 S1PR3Q99500 378 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 MMP27Q9H306 513 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 RHBDL2Q9NX52 303 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 RDH8Q9NYR8 311 aa9.15□□□□□ -0.94
CCDC88C-208ENST00000554165 TMEM235A6NFC5 223 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 SERPINE3A8MV23 424 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 TXNL1O43396 289 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 SSX5O60225 188 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 IGHG2P01859 326 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 ZBTB25P24278 435 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 RPS19P39019 145 aaKnown RBP9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 GPR12P47775 334 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 ACTBP60709 375 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 MRPS15P82914 257 aaKnown RBP9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 SLC35E3Q7Z769 313 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 FAM71E2Q8N5Q1 922 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 C5orf30Q96GV9 206 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 ST6GALNAC5Q9BVH7 336 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 ABCG5Q9H222 651 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 MGAT4AQ9UM21 535 aa9.14□□□□□ -0.95
CCDC88C-208ENST00000554165 TCRBV4S1A1TA0A5B7 111 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 PSMB11A5LHX3 300 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 J3QRK9 145 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 RAB29O14966 203 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 KCNAB3O43448 404 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 FCER2P06734 321 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 OR8U9P0C7N5 309 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 PTHLHP12272 177 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 TALDO1P37837 337 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 RANBP1P43487 201 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 NCS1P62166 190 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 MMDQ15546 238 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 ZNF260Q3ZCT1 412 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 HACD4Q5VWC8 232 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 LCNL1Q6ZST4 164 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 C18orf65Q6ZTR6 163 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 NDUFA11Q86Y39 141 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 OR4A4PQ8NGN8 299 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 OR8U1Q8NH10 309 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 R3HDM4Q96D70 268 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 CABLES2Q9BTV7 478 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 FUNDC2Q9BWH2 189 aa9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 NAA50Q9GZZ1 169 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-208ENST00000554165 TRAV18A0A075B6X5 111 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 TRBV6-7A0A0A0MS04 114 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 H0YJW9 148 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 ITGB1BP1O14713 200 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 KHDC1LQ5JSQ8 128 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 ZNF383Q8NA42 475 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 RASL11BQ9BPW5 248 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 VCX3AQ9NNX9 186 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 LIN7CQ9NUP9 197 aaKnown RBP9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 PIPOXQ9P0Z9 390 aa9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 ZNF107Q9UII5 783 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-208ENST00000554165 M0R1X1 148 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 RRP9O43818 475 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OPN1MWP04001 364 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OPN1MW2P0DN77 364 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 OPN1MW3P0DN78 364 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 DTYMKP23919 212 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 VBP1P61758 197 aa9.11□□□□□ -0.95
CCDC88C-208ENST00000554165 DEFA6Q01524 100 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms