RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 TBC1D28Q2M2D7 210 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OCIAD2Q56VL3 154 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 TMEM128Q5BJH2 165 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR10J3Q5JRS4 329 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 HENMT1Q5T8I9 393 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 OGFRL1Q5TC84 451 aaPredicted RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 FAM222AQ5U5X8 452 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SAMD13Q5VXD3 122 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SMARCD3Q6STE5 483 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SPINT4Q6UDR6 99 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 Q6ZT83 130 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SNX29P2Q8IUI4 249 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 CPNE9Q8IYJ1 553 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 BLIDQ8IZY5 108 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 C12orf45Q8N5I9 185 aaPredicted RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 JAGN1Q8N5M9 183 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 GDPD1Q8N9F7 314 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR4M1Q8NGD0 313 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR13C4Q8NGS5 318 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR6N1Q8NGY5 312 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR13G1Q8NGZ3 307 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR4X1Q8NH49 305 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 PLPPR1Q8TBJ4 325 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 HAVCR2Q8TDQ0 301 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 CASTOR1Q8WTX7 329 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 ORAOV1Q8WV07 137 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 ZCCHC13Q8WW36 166 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR8D1Q8WZ84 308 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 APOBEC3DQ96AK3 386 aaPredicted RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 NEURL3Q96EH8 262 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 CENPNQ96H22 339 aaPredicted RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 ZNF488Q96MN9 340 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 KCTD7Q96MP8 289 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 COL21A1Q96P44 957 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 KLF6Q99612 283 aaPredicted RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 GPR22Q99680 433 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 PDCD10Q9BUL8 212 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SNHG12Q9BXW3 62 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 ARL6Q9H0F7 186 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 MED9Q9NWA0 146 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 TAS2R13Q9NYV9 303 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 COPZ2Q9P299 210 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 METTL1Q9UBP6 276 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 SS18L2Q9UHA2 77 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SCP2D1Q9UJQ7 156 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 YARS2Q9Y2Z4 477 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 WIZO95785 1651 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 HTTP42858 3142 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 CLIP1P30622 1438 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SETD5Q9C0A6 1442 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 TARBP1Q13395 1621 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 ZDBF2Q9HCK1 2354 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SYNMO15061 1565 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 DNMBPQ6XZF7 1577 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 CNTNAP1P78357 1384 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 USP47Q96K76 1375 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 PTPN13Q12923 2485 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 MUC6Q6W4X9 2439 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 CUL7Q14999 1698 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 USP34Q70CQ2 3546 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 ABCA12Q86UK0 2595 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 MEIKINA0A087WXM9 373 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 GLYATL1P3A0A0U1RQE8 302 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 FAM159BA6NKW6 160 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 CLDN24A6NM45 220 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 EFCAB9A8MZ26 197 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 SEC14L6B5MCN3 397 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 KRBOX1C9JBD0 128 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 F6UZH7 168 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 TRAPPC2LH3BP13 241 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 I3L521 148 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 M0R143 59 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 SIRPB1O00241 398 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 FAAHO00519 579 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 SYNGR1O43759 233 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 ORC5O43913 435 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 TPST1O60507 370 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 CDC40O60508 579 aaKnown RBP eCLIP1.46□□□□□ -2.18
VRK1-202ENST00000553683 SLC16A7O60669 478 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 ENTPD6O75354 484 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 HSBP1O75506 76 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 EEDO75530 441 aaKnown RBP1.46□□□□□ -2.18
VRK1-202ENST00000553683 STK16O75716 305 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 CNMDO75829 334 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 RAB36O95755 333 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 CD160O95971 181 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 IFNA17P01571 189 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 TYMSP04818 313 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 SERPINA7P05543 415 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 CRYGDP07320 174 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 RHOCP08134 193 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 TRAPPC2P0DI81 140 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 TRAPPC2BP0DI82 140 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 CD79AP11912 226 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 TAC1P20366 129 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 HIST1H1TP22492 207 aaPredicted RBP1.46□□□□□ -2.18
VRK1-202ENST00000553683 KDELR1P24390 212 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 LOXP28300 417 aaPredicted RBP1.46□□□□□ -2.18
VRK1-202ENST00000553683 S100GP29377 79 aa1.46□□□□□ -2.18
VRK1-202ENST00000553683 APLNRP35414 380 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms