RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RND1Q92730 232 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CLCC1Q96S66 551 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 SPIN2AQ99865 258 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 SPIN2BQ9BPZ2 258 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 PLEKHF2Q9H8W4 249 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 PLEKHA2Q9HB19 425 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 KCNJ16Q9NPI9 418 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 GFOD1Q9NXC2 390 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 DKK4Q9UBT3 224 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 TP53TG5Q9Y2B4 290 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 TNRC6BQ9UPQ9 1833 aaKnown RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 TRGV8A0A0C4DH27 118 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 LRP5LA4QPB2 252 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CLEC18AA5D8T8 446 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 UMAD1C9J7I0 102 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 LYNX1G3V0Z9 82 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IGKV1-39P01597 117 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IGHV3-48P01763 117 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 GYPAP02724 150 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IGKV1D-39P04432 117 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 H2AFB1P0C5Y9 115 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 LYNX1P0DP58 116 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 PRDX2P32119 198 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 KCNJ3P48549 501 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 PEA15Q15121 130 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 WDR82Q6UXN9 313 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 GFRALQ6UXV0 394 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 ASCL5Q7RTU5 278 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 STX12Q86Y82 276 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CLEC18CQ8NCF0 446 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CCDC168Q8NDH2 2452 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 OR8G5Q8NG78 346 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IGFBPL1Q8WX77 278 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 NEUROG1Q92886 237 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 GALNT14Q96FL9 552 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 TMPRSS5Q9H3S3 457 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 MMP26Q9NRE1 261 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 POMT1Q9Y6A1 747 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 TRBV6-7A0A0A0MS04 114 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 hCG_1809904A0A1W2PP81 198 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 A0A1W2PR64 198 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 A0A1W2PRV1 198 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 TMEM30CPA0ZSE6 113 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 TUBAL3A6NHL2 446 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CEACAM18A8MTB9 384 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CDK2AP1O14519 115 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IGKV1-5P01602 117 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 FOSL1P15407 271 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 HNF1AP20823 631 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 ECI1P42126 302 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 RAB11AP62491 216 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 RPL23AP62750 156 aaKnown RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 NAAAQ02083 359 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 SRSF4Q08170 494 aaKnown RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IL24Q13007 206 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 KRTAP27-1Q3LI81 207 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 INO80CQ6PI98 192 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-215ENST00000552823 FAM24BQ8N5W8 94 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CD177Q8N6Q3 437 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 BOD1Q96IK1 185 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 SCNM1Q9BWG6 230 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 IL36GQ9NZH8 169 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 CACFD1Q9UGQ2 172 aa4.7□□□□□ -1.66
LIMA1-215ENST00000552823 A0A1W2PPH5 198 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 FAM90A27PA6NNH2 459 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 ZG16O60844 167 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 TNFSF13O75888 250 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 CDS2O95674 445 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 PGA5P0DJD9 388 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 COX5BP10606 129 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 TUBG1P23258 451 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 PAX6P26367 422 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 SULT1A2P50226 295 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 LYG1Q8N1E2 194 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 FAM216BQ8N7L0 139 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 COQ2Q96H96 371 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 TECTBQ96PL2 329 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 CXXC4Q9H2H0 198 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 ZNF665Q9H7R5 613 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 SLC25A22Q9H936 323 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 GLS2Q9UI32 602 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 SVEP1Q4LDE5 3571 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 DSCAMO60469 2012 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 ARPC4-TTLL3A0A0A6YYG9 625 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 A0A1W2PRD5 423 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 A0A1W2PRF3 423 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 A0A1W2PRM7 423 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 FGF16O43320 207 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 SYNGR2O43760 224 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 SS18L1O75177 396 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-215ENST00000552823 CA11O75493 328 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 CLDN14O95500 239 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 IFNA10P01566 189 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 CTXN2P0C2S0 81 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 GPR12P47775 334 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 UBE2G2P60604 165 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 BAXQ07812 192 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 AWAT1Q58HT5 328 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 PDZD11Q5EBL8 140 aa4.69□□□□□ -1.66
LIMA1-215ENST00000552823 SOHLH1Q5JUK2 328 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms