RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SLC25A53Q5H9E4 307 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 DCAF10Q5QP82 559 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 OR8G2PQ6IF36 304 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 Q6ZWC4 215 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 CENPVQ7Z7K6 275 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 MRPL30Q8TCC3 161 aaKnown RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 LHX4Q969G2 390 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 SGCZQ96LD1 299 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 IMMP2LQ96T52 175 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM204Q9BSN7 226 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 C12orf49Q9H741 205 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 OR6C3Q9NZP0 311 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 NAT8Q9UHE5 227 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 CSMD1Q96PZ7 3565 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 A0A0J9YW62 118 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 YPEL1O60688 119 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 KBTBD11O94819 623 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 IFNA5P01569 189 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 CST2P09228 141 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 C1QTNF9P0C862 333 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 OR3A1P47881 315 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 RPL15P61313 204 aaKnown RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 PMP22Q01453 160 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 GCSAMLQ5JQS6 135 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 SPANXN5Q5MJ07 72 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 FAM78BQ5VT40 261 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM42Q69YG0 159 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 MRPL21Q7Z2W9 205 aaKnown RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 MRGPRGQ86SM5 289 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 OR4F5Q8NH21 305 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 ABHD3Q8WU67 409 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 RNF138Q8WVD3 245 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM54Q969K7 222 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 SPSB1Q96BD6 273 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 YPEL2Q96QA6 119 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 OR4F4Q96R69 305 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 SRXN1Q9BYN0 137 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 RIMS4Q9H426 269 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 LPAR2Q9HBW0 351 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 MSL2Q9HCI7 577 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 OR1A1Q9P1Q5 309 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 NAGKQ9UJ70 344 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 PAM16Q9Y3D7 125 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 KALRNO60229 2985 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 NCKAP5O14513 1909 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 DMXL2Q8TDJ6 3036 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TOX3O15405 576 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TUSC2O75896 110 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 NAPSAO96009 420 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 HRASP01112 189 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 GYPAP02724 150 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 WNT2P09544 360 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 HNF1AP20823 631 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 F2RP25116 425 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 BRS3P32247 399 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TNFSF10P50591 281 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 CNN1P51911 297 aaKnown RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 CLDN15P56746 228 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 LINC00205P59089 165 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 HOXA4Q00056 320 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 PSG4Q00888 419 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 LRRC75BQ2VPJ9 315 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 C10orf128Q5T292 105 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM211Q6ICI0 200 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 FOXL2NBQ6ZUU3 175 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 RDH5Q92781 318 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TMEM18Q96B42 140 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 R3HDM4Q96D70 268 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 WDR61Q9GZS3 305 aaKnown RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 CTDSP1Q9GZU7 261 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 OPN3Q9H1Y3 402 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 PRDM6Q9NQX0 595 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 ERRFI1Q9UJM3 462 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-214ENST00000552783 KCNS2Q9ULS6 477 aa4.12□□□□□ -1.75
LIMA1-214ENST00000552783 TRBV20OR9-2A0A075B6H5 130 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 hCG_38984A0A1B0GV85 526 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 C5orf49A4QMS7 147 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF705FA8MVS1 300 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 HS3ST1O14792 307 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 RBFOX2O43251 390 aaKnown RBP eCLIP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 PAGE4O60829 102 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF705DP0CH99 300 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF705BP0CI00 300 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 GPM6AP51674 278 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 RNPS1Q15287 305 aaKnown RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 CNN3Q15417 329 aaKnown RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 C3AR1Q16581 482 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 IQCJQ1A5X6 159 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SPINK9Q5DT21 86 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SPATA46Q5T0L3 261 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ABHD17BQ5VST6 288 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SPINK14Q6IE38 97 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 DPPA3Q6W0C5 159 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 OR2T10Q8NGZ9 312 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SCGB1C1Q8TD33 95 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 MS4A10Q96PG2 267 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SPIN2AQ99865 258 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 SPIN2BQ9BPZ2 258 aa4.11□□□□□ -1.75
LIMA1-214ENST00000552783 ZNF703Q9H7S9 590 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-214ENST00000552783 PSENENQ9NZ42 101 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms