RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 TCF19Q9Y242 345 aa13.05□□□□□ -0.32
CHMP1A-209ENST00000550872 IGHV1-3A0A0C4DH29 117 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 A0A1W2PPI3 338 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 LANCL1O43813 399 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 ZNF137PP52743 207 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 ARPC4P59998 168 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 CCBE1Q6UXH8 406 aaPredicted RBP13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 ODF3L1Q8IXM7 274 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 OR56B4Q8NH76 319 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 RTN4IP1Q8WWV3 396 aaPredicted RBP13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 DIRAS2Q96HU8 199 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 ABHD14BQ96IU4 210 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 TOLLIPQ9H0E2 274 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 PIPOXQ9P0Z9 390 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 NBEAL1Q6ZS30 2694 aa13.04□□□□□ -0.32
CHMP1A-209ENST00000550872 A6NDX4 124 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 RAB29O14966 203 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 TXNL1O43396 289 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 OR3A3P47888 321 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 RPL15P61313 204 aaKnown RBP13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 DHRS7BQ6IAN0 325 aaPredicted RBP13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 LIAT1Q6ZQX7 453 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 TMEM219Q86XT9 240 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 H1FOOQ8IZA3 346 aaPredicted RBP13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 GPX8Q8TED1 209 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 TAF15Q92804 592 aaKnown RBP eCLIP13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 S1PR3Q99500 378 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 AGMATQ9BSE5 352 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 NXF2Q9GZY0 626 aaKnown RBP13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 GHITMQ9H3K2 345 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 SCPEP1Q9HB40 452 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 RAB18Q9NP72 206 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 ZNF221Q9UK13 617 aa13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 RBM7Q9Y580 266 aaKnown RBP13.03□□□□□ -0.32
CHMP1A-209ENST00000550872 SAA2-SAA4A0A096LPE2 208 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 IGHV3-72A0A0B4J1Y9 119 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 TPPPO94811 219 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 SNRNP70P08621 437 aaKnown RBP13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 OR8U9P0C7N5 309 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 FAM106CPP0CH98 169 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 SAA2P0DJI9 122 aaPredicted RBP13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 HKR1P10072 659 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 HES1Q14469 280 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 THNSL2Q86YJ6 484 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 OR8U1Q8NH10 309 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 C15orf40Q8WUR7 153 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 CFHR4Q92496 578 aa13.02□□□□□ -0.33
CHMP1A-209ENST00000550872 FAM90A9PA6NNJ1 464 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 J3QRK9 145 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 SULT1C2O00338 296 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 CHST1O43916 411 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 NFYAP23511 347 aaPredicted RBP13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 GPR12P47775 334 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 RPL39P5Q59GN2 51 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 RNASE12Q5GAN4 147 aaKnown RBP13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 ZNF833PQ6ZTB9 187 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 SNAPC3Q92966 411 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 ABHD1Q96SE0 405 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 MRPL20Q9BYC9 149 aaKnown RBP13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 MMP27Q9H306 513 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 NECAP2Q9NVZ3 263 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 C1RLQ9NZP8 487 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 ANAPC10Q9UM13 185 aa13.01□□□□□ -0.33
CHMP1A-209ENST00000550872 TMEM89A2RUT3 159 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 IGKV1D-33P01593 117 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 IGKV1-33P01594 117 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 CD1BP29016 333 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 TNFSF8P32971 234 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 HABP2Q14520 560 aaPredicted RBP13□□□□□ -0.33
CHMP1A-209ENST00000550872 HNF4GQ14541 408 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 FOXB2Q5VYV0 432 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 OR5AP2Q8NGF4 316 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 ZNF251Q9BRH9 671 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 OR2D2Q9H210 308 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 OR2W1Q9Y3N9 320 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 A3GALT2U3KPV4 340 aa13□□□□□ -0.33
CHMP1A-209ENST00000550872 ZNF736B4DX44 427 aaPredicted RBP12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 OR5H8P0DN80 308 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 TMEM11P17152 192 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 NAT1P18440 290 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 S100A5P33763 92 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 LUMP51884 338 aaPredicted RBP12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 RAG2P55895 527 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 RELBQ01201 579 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 FOXL1Q12952 345 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 IL18Q14116 193 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 CDK10Q15131 360 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 FBLN7Q53RD9 439 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 FAM71F2Q6NXP2 309 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 OR2T10Q8NGZ9 312 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 OR52I2Q8NH67 350 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 AKR1E2Q96JD6 320 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 NABP2Q9BQ15 211 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 SLC25A33Q9BSK2 321 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 NPFFR1Q9GZQ6 430 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 RABL2AQ9UBK7 228 aaPredicted RBP12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 RABL2BQ9UNT1 228 aa12.99□□□□□ -0.33
CHMP1A-209ENST00000550872 RBBP9O75884 186 aa12.98□□□□□ -0.33
CHMP1A-209ENST00000550872 OR2F2O95006 317 aa12.98□□□□□ -0.33
CHMP1A-209ENST00000550872 NDUFA7O95182 113 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms