RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 POC1AQ8NBT0 407 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 NRIP2Q9BQI9 281 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 OR51I2Q9H344 312 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 IGHV3-72A0A0B4J1Y9 119 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 CA11O75493 328 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 RPL31P62899 125 aaKnown RBP12.8□□□□□ -0.36
CUX1-214ENST00000550008 H3F3AP84243 136 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 ZNF90Q03938 601 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 C1orf185Q5T7R7 199 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 Q6ZT83 130 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 BAGE3Q86Y29 109 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 BAGE2Q86Y30 109 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 FGFRL1Q8N441 504 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 MISP3Q96FF7 219 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 TMEM204Q9BSN7 226 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 SCGB1D1O95968 90 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 CYB5R3P00387 301 aaPredicted RBP12.8□□□□□ -0.36
CUX1-214ENST00000550008 CD3EP07766 207 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 IGHV1-2P23083 117 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 CSRP2Q16527 193 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 VKORC1L1Q8N0U8 176 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 COMMD1Q8N668 190 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 C15orf54Q8N8G6 183 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 C9orf106Q8NAJ2 232 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 OR4S2Q8NH73 311 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 CMTM2Q8TAZ6 248 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 PRR7Q8TB68 274 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 TMEM37Q8WXS4 190 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 LINC00470Q9BZP3 86 aa12.8□□□□□ -0.36
CUX1-214ENST00000550008 FOXD3Q9UJU5 478 aaPredicted RBP12.8□□□□□ -0.36
CUX1-214ENST00000550008 TMEM210A6NLX4 147 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 MPV17P39210 176 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 CDC34P49427 236 aaPredicted RBP12.79□□□□□ -0.36
CUX1-214ENST00000550008 GNB2P62879 340 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 WDYHV1Q96HA8 205 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 TM2D1Q9BX74 207 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 C1QTNF5Q9BXJ0 243 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 TRAV38-1A0A0B4J264 116 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 A0A1B0GU03 582 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 CD8AP01732 235 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 CT45A6P0DMU7 189 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 CT45A5P0DMU8 189 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 CT45A7P0DMV0 189 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 CT45A1Q5HYN5 189 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 ZNF705AQ6ZN79 300 aaPredicted RBP12.79□□□□□ -0.36
CUX1-214ENST00000550008 ZNF561Q8N587 486 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 CT45A3Q8NHU0 189 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 MARS2Q96GW9 593 aaKnown RBP12.79□□□□□ -0.36
CUX1-214ENST00000550008 ZNF251Q9BRH9 671 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 TMEM147Q9BVK8 224 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 LAMA2P24043 3122 aaKnown RBP12.79□□□□□ -0.36
CUX1-214ENST00000550008 MFSD2BA6NFX1 497 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 SEC11BP0C7V7 166 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 NPBWR1P48145 328 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 RPEQ96AT9 228 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 TMEM45BQ96B21 275 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 HTTP42858 3142 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 NCBP2LA6PVI3 153 aaKnown RBP12.79□□□□□ -0.36
CUX1-214ENST00000550008 F6UZH7 168 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 COX5BP10606 129 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 RAB7AP51149 207 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 GABRA6Q16445 453 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 SELENOHQ8IZQ5 122 aaKnown RBP12.79□□□□□ -0.36
CUX1-214ENST00000550008 TMEM230Q96A57 120 aa12.79□□□□□ -0.36
CUX1-214ENST00000550008 IGKV1-27A0A075B6S5 117 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 IGHV3-21A0A0B4J1V1 117 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 ZNF320A2RRD8 509 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 F8VVB4 439 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 F8VWA3 439 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 H0YIZ8 118 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 G0S2P27469 103 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 NAAAQ02083 359 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 TIGITQ495A1 244 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 AQP10Q96PS8 301 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 HSD17B10Q99714 261 aaKnown RBP12.78□□□□□ -0.36
CUX1-214ENST00000550008 GNB4Q9HAV0 340 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 DOCK11Q5JSL3 2073 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 MDKP21741 143 aaPredicted RBP12.78□□□□□ -0.36
CUX1-214ENST00000550008 SULT1A2P50226 295 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 BCL2L2Q92843 193 aaPredicted RBP12.78□□□□□ -0.36
CUX1-214ENST00000550008 HES4Q9HCC6 221 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 PNRC2Q9NPJ4 139 aaKnown RBP12.78□□□□□ -0.36
CUX1-214ENST00000550008 SPRR3Q9UBC9 169 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 H0Y980 276 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 ZCCHC24Q8N2G6 241 aaKnown RBP12.78□□□□□ -0.36
CUX1-214ENST00000550008 RHOVQ96L33 236 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 PKIBQ9C010 78 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 GAL3ST2Q9H3Q3 398 aa12.78□□□□□ -0.36
CUX1-214ENST00000550008 IGKV1D-13A0A0B4J2D9 117 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 CCL21O00585 134 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 COX7A2P2O60397 106 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 SMPD2O60906 423 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 IGKV1-13P0DP09 117 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 UBE2G1P62253 170 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 FAM209BQ5JX69 171 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 ZNF665Q9H7R5 613 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 KIAA1456Q9P272 454 aa12.77□□□□□ -0.36
CUX1-214ENST00000550008 OTOGLQ3ZCN5 2332 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 ODAMA1E959 279 aa12.77□□□□□ -0.37
CUX1-214ENST00000550008 CRYGSP22914 178 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms