RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 FUOMA2VDF0 154 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 RIIAD1A6NNX1 92 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 C15orf62A8K5M9 175 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 H0Y980 276 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 GAGE7O76087 117 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 NPPAP01160 153 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 GAGE12FP0CL80 117 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 GAGE12GP0CL81 117 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 GAGE12IP0CL82 117 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF3P17036 446 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 BLVRBP30043 206 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-204ENST00000549064 RRM2P31350 389 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 CHRNA7P36544 502 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 IFNGR2P38484 337 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 NDPQ00604 133 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF415Q09FC8 603 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 GAGE1Q13065 139 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 GAGE4Q13068 117 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF146Q15072 292 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 UBE2V2Q15819 145 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 COQ5Q5HYK3 327 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 RPL13AP3Q6NVV1 102 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 IL34Q6ZMJ4 242 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 PLEKHG7Q6ZR37 379 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF575Q86XF7 245 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 ENTHD1Q8IYW4 607 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 IQCF1Q8N6M8 205 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 PRR26Q8N8Z3 221 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 MINDY2Q8NBR6 621 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 RCN3Q96D15 328 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 MBOAT4Q96T53 435 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 NEURL2Q9BR09 285 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 OSBPL10Q9BXB5 764 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 EXOSC4Q9NPD3 245 aaKnown RBP4.86□□□□□ -1.63
LIMA1-204ENST00000549064 GID8Q9NWU2 228 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 C11orf21Q9P2W6 132 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 NUFIP1Q9UHK0 495 aaKnown RBP4.86□□□□□ -1.63
LIMA1-204ENST00000549064 V9GYY5 206 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-204ENST00000549064 A0A0G2JND7 137 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 ACOD1A6NK06 481 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 BBIP1A8MTZ0 92 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 PRSS46E5RG02 174 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 SH2D1BO14796 132 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 MAGEB4O15481 346 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-204ENST00000549064 IFNGP01579 166 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF44P15621 663 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 ALOX5APP20292 161 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 FASP25445 335 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 CD1BP29016 333 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 HTR1FP30939 366 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 SSTR5P35346 364 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 SMIM11AP58511 58 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 CDC42P60953 191 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 CX3CL1P78423 397 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 RAB40BQ12829 278 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 MMDQ15546 238 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 SPIN3Q5JUX0 258 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 SAMD4BQ5PRF9 694 aaKnown RBP4.85□□□□□ -1.63
LIMA1-204ENST00000549064 MORN5Q5VZ52 161 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 LCN12Q6JVE5 192 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 RASSF6Q6ZTQ3 369 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 LINC00336Q6ZUF6 198 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 TMEM179BQ7Z7N9 219 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 LYG2Q86SG7 212 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 KRTAP19-1Q8IUB9 90 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 YIPF7Q8N8F6 280 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 OR9G4Q8NGQ1 327 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 UBALD1Q8TB05 177 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 MRGPRDQ8TDS7 321 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 PHLDA1Q8WV24 401 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-204ENST00000549064 RTN4IP1Q8WWV3 396 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-204ENST00000549064 TLCD1Q96CP7 247 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 BORCS8Q96FH0 119 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 SPACA5Q96QH8 159 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 CSTL1Q9H114 145 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 Q9H8V8 135 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 SLC25A19Q9HC21 320 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 CMC2Q9NRP2 79 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 INTS9Q9NV88 658 aaKnown RBP4.85□□□□□ -1.63
LIMA1-204ENST00000549064 KIF25Q9UIL4 384 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 LAMP5Q9UJQ1 280 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 COPS3Q9UNS2 423 aa4.85□□□□□ -1.63
LIMA1-204ENST00000549064 MEIKINA0A087WXM9 373 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 IGHV3-43A0A0B4J1X8 118 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 IGKV1-12A0A0C4DH73 117 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 LOC100996750A0A140TA64 210 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 OR11H12B2RN74 326 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 LOC110117498-PIK3R3F6TDL0 507 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 SRSF10O75494 262 aaKnown RBP4.84□□□□□ -1.63
LIMA1-204ENST00000549064 IGKV1D-12P01611 117 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 HLA-DRB1P01911 266 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 SEMG1P04279 462 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 CSN2P05814 226 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 MRPL3P09001 348 aaKnown RBP4.84□□□□□ -1.63
LIMA1-204ENST00000549064 IGHV3-43DP0DP04 118 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 PSG1P11464 419 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 SYNJ2BPP57105 145 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 TPPP2P59282 170 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 PPP1R8Q12972 351 aaKnown RBP4.84□□□□□ -1.63
LIMA1-204ENST00000549064 LRRC36Q1X8D7 754 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms