RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 IL36GQ9NZH8 169 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 H3F3AP84243 136 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 MUC6Q6W4X9 2439 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 F8VVB4 439 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 F8VWA3 439 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 GZMHP20718 246 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 TIGITQ495A1 244 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 FAM89BQ8N5H3 189 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 WBP1Q96G27 269 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 LHX2P50458 406 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 MOB3BQ86TA1 216 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 GGNQ86UU5 652 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 VKORC1L1Q8N0U8 176 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 OR4C12Q96R67 309 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 OR6C3Q9NZP0 311 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 IGSF23A1L1A6 192 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 NDUFB3O43676 98 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 LGALS4P56470 323 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 OR5P3Q8WZ94 311 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 DCTN5Q9BTE1 182 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 FOXD3Q9UJU5 478 aaPredicted RBP13.37□□□□□ -0.27
CUX1-211ENST00000546411 KIAA1671Q9BY89 1806 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 CA11O75493 328 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 HRASP01112 189 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 CCL1P22362 96 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 COX7A1P24310 79 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 ZNF385CQ66K41 422 aaPredicted RBP13.37□□□□□ -0.27
CUX1-211ENST00000546411 MARVELD3Q96A59 401 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 CCL13Q99616 98 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 WIPI2Q9Y4P8 454 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 GTF3C1Q12789 2109 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 PRRC2CQ9Y520 2896 aaKnown RBP13.37□□□□□ -0.27
CUX1-211ENST00000546411 LOC105371267A0A1B0GV96 52 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 PITX3O75364 302 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 OR10J4P0C629 311 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 HLA-GP17693 338 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 CLDN18P56856 261 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 BSXQ3C1V8 233 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 FAM201AQ5SY85 155 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 ITLN1Q8WWA0 313 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 C1QTNF5Q9BXJ0 243 aa13.37□□□□□ -0.27
CUX1-211ENST00000546411 TRAV20A0A0B4J274 112 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 IL3RAP26951 378 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 SNX22Q96L94 193 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 HSD17B10Q99714 261 aaKnown RBP13.36□□□□□ -0.27
CUX1-211ENST00000546411 SLC35D1Q9NTN3 355 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 FBLN5Q9UBX5 448 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 G3V3Q6 166 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 NTF3P20783 257 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 ERVFC1-1P60608 527 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 DRAM1Q8N682 238 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 ZNRF1Q8ND25 227 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 RND3P61587 244 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 ABHD14AQ9BUJ0 271 aa13.36□□□□□ -0.27
CUX1-211ENST00000546411 LYRM2Q9NU23 88 aaPredicted RBP13.36□□□□□ -0.27
CUX1-211ENST00000546411 RYDENQ9NUL5 291 aaKnown RBP13.36□□□□□ -0.27
CUX1-211ENST00000546411 H0Y8G0 127 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 CRYGSP22914 178 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 OPRK1P41145 380 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 GALR1P47211 349 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 SUB1P53999 127 aaKnown RBP eCLIP13.35□□□□□ -0.27
CUX1-211ENST00000546411 HGFACQ04756 655 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 BSCL2Q96G97 398 aaPredicted RBP13.35□□□□□ -0.27
CUX1-211ENST00000546411 ZDHHC11Q9H8X9 412 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 SEMA5BQ9P283 1151 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 NCOA6Q14686 2063 aaPredicted RBP13.35□□□□□ -0.27
CUX1-211ENST00000546411 C2orf16Q68DN1 1984 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 MEOX2P50222 304 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 LRRC10Q5BKY1 277 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 KIAA1456Q9P272 454 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 C11orf94C9JXX5 98 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 CTSSP25774 331 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 PSG7Q13046 419 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 RNF212Q495C1 297 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 OR4S2Q8NH73 311 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 CMTM2Q8TAZ6 248 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 FAM103A1Q9BTL3 118 aaKnown RBP13.35□□□□□ -0.27
CUX1-211ENST00000546411 TMPRSS5Q9H3S3 457 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 CHD7Q9P2D1 2997 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 COL4A3Q01955 1670 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 PCNX3Q9H6A9 2034 aa13.35□□□□□ -0.27
CUX1-211ENST00000546411 ZG16O60844 167 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 S1PR2O95136 353 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 DANCRP0C864 163 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 UBE2G1P62253 170 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 ABLIM2Q6H8Q1 611 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 BMPERQ8N8U9 685 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 OR8G5Q8NG78 346 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 GALNT14Q96FL9 552 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 RHOVQ96L33 236 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 ZNF98A6NK75 572 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 FAM78BQ5VT40 261 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 SAP30LQ9HAJ7 183 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 SRSF10O75494 262 aaKnown RBP13.34□□□□□ -0.27
CUX1-211ENST00000546411 QRFPP83859 136 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 OR5D13Q8NGL4 314 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 MRPL30Q8TCC3 161 aaKnown RBP13.34□□□□□ -0.27
CUX1-211ENST00000546411 CORO2AQ92828 525 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 CYYR1Q96J86 154 aa13.34□□□□□ -0.27
CUX1-211ENST00000546411 PRO1933Q9H354 126 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms