RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 DEPPQ9NTK1 212 aa7.4□□□□□ -1.22
TDP1-204ENST00000545686 MBNL3Q9NUK0 354 aaKnown RBP7.4□□□□□ -1.22
TDP1-204ENST00000545686 KCNS2Q9ULS6 477 aa7.4□□□□□ -1.22
TDP1-204ENST00000545686 COL27A1Q8IZC6 1860 aaPredicted RBP7.4□□□□□ -1.23
TDP1-204ENST00000545686 SYNGR4O95473 234 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 CD55P08174 381 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 JMJD7P0C870 316 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 CD99P14209 185 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 CCKARP32238 428 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 CYB561P49447 251 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 LCN2P80188 198 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 Q0VFX4 171 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 ACSM6Q6P461 480 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 UNQ6494/PRO21346Q6UXR6 183 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 BEND4Q6ZU67 534 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 C17orf78Q8N4C9 275 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 TMEM18Q96B42 140 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 RPUSD4Q96CM3 377 aaKnown RBP7.4□□□□□ -1.23
TDP1-204ENST00000545686 ZNF488Q96MN9 340 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 MRPL37Q9BZE1 423 aaKnown RBP7.4□□□□□ -1.23
TDP1-204ENST00000545686 WIPI2Q9Y4P8 454 aa7.4□□□□□ -1.23
TDP1-204ENST00000545686 RBM7Q9Y580 266 aaKnown RBP7.4□□□□□ -1.23
TDP1-204ENST00000545686 A0A096LPE4 126 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 A0A1W2PPZ6 126 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 ZNF503-AS2A6NEH8 195 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 SOX15O60248 233 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 CLDN1O95832 211 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 NGFP01138 241 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 P0C879 139 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 CCL4P13236 92 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 CCL2P13500 99 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 COX5AP20674 150 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 GZMHP20718 246 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 LHX2P50458 406 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 NUBP1P53384 320 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 VWC2Q2TAL6 325 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 KCNIP4Q6PIL6 250 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 ZNF66Q6ZN08 573 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 DRAM1Q8N682 238 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 OR1K1Q8NGR3 316 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 OR2T10Q8NGZ9 312 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 NEIL1Q96FI4 390 aaPredicted RBP7.39□□□□□ -1.23
TDP1-204ENST00000545686 PTPRBP23467 1997 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 DIDO1Q9BTC0 2240 aaKnown RBP7.39□□□□□ -1.23
TDP1-204ENST00000545686 B4E171 279 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 J3QW42 95 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 GYPAP02724 150 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 SERPINA7P05543 415 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 MDKP21741 143 aaPredicted RBP7.39□□□□□ -1.23
TDP1-204ENST00000545686 TSPAN7P41732 249 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 DUSP3P51452 185 aaPredicted RBP7.39□□□□□ -1.23
TDP1-204ENST00000545686 IDH3GP51553 393 aaPredicted RBP7.39□□□□□ -1.23
TDP1-204ENST00000545686 TMEM249Q2WGJ8 235 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 FAM180AQ6UWF9 173 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 ZNF664Q8N3J9 261 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 FGFRL1Q8N441 504 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 ZNF645Q8N7E2 425 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 TCTEX1D1Q8N7M0 179 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 OR10G9Q8NGN4 311 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 OR10G7Q8NGN6 311 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 OR4F5Q8NH21 305 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 CIB3Q96Q77 187 aaPredicted RBP7.39□□□□□ -1.23
TDP1-204ENST00000545686 OR4F4Q96R69 305 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 IMMP2LQ96T52 175 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 RTL8AQ9BWD3 113 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 UBE2ZQ9H832 354 aaPredicted RBP7.39□□□□□ -1.23
TDP1-204ENST00000545686 SLC25A22Q9H936 323 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 OR6C3Q9NZP0 311 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 PILRBQ9UKJ0 227 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 TRAPPC2LQ9UL33 140 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 POLDIP2Q9Y2S7 368 aa7.39□□□□□ -1.23
TDP1-204ENST00000545686 USF3Q68DE3 2245 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 PINLYPA6NC86 204 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 WDR1O75083 606 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 ZNF16P17020 682 aaPredicted RBP7.38□□□□□ -1.23
TDP1-204ENST00000545686 TUBG1P23258 451 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 CLDN18P56856 261 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 SPCS3P61009 180 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 ERVS71-1P61550 626 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 P2RY6Q15077 328 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 SSX2Q16385 188 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 IQCJQ1A5X6 159 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 PMS2CLQ68D20 193 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 OR8G2PQ6IF36 304 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 NECAP1Q8NC96 275 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 APH1AQ96BI3 265 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 DIRC2Q96SL1 478 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 PCGF1Q9BSM1 259 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 ZNF703Q9H7S9 590 aaPredicted RBP7.38□□□□□ -1.23
TDP1-204ENST00000545686 B4GALT7Q9UBV7 327 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 DOCK11Q5JSL3 2073 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 GTF3C1Q12789 2109 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 A0A1W2PPQ1 181 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 LRRC30A6NM36 301 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 PMS2P5A8MQ11 134 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 C17orf112F2Z3M2 114 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 TMPRSS2O15393 492 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 MLNRO43193 412 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 OR2H2O95918 312 aa7.38□□□□□ -1.23
TDP1-204ENST00000545686 RNF224P0DH78 156 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms