RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 SH3BGRL3Q9H299 93 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 MSL2Q9HCI7 577 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.56□□□□□ -1.52
USP28-206ENST00000538224 UFSP2Q9NUQ7 469 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 PSENENQ9NZ42 101 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 KIAA1456Q9P272 454 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 HSPB7Q9UBY9 170 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 IL19Q9UHD0 177 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 DUSP13Q9UII6 198 aa5.56□□□□□ -1.52
USP28-206ENST00000538224 A0A0G2JRQ6 117 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 ODAMA1E959 279 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 KIAA1324LA8MWY0 1029 aaPredicted RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 A8MXE2 369 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 VSTM5A8MXK1 200 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 ATP6V1G2-DDX39BF2Z307 99 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 F2RL2O00254 374 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 RBFOX2O43251 390 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP28-206ENST00000538224 YPEL1O60688 119 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 ZNF737O75373 536 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 CST7O76096 145 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 CLDN1O95832 211 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 IGKV1-39P01597 117 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 IGKV1-5P01602 117 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 IGKV1D-39P04432 117 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 H2AFB1P0C5Y9 115 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 IRF2P14316 349 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 SPINK2P20155 84 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 OMGP23515 440 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 CEBPDP49716 269 aaPredicted RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 PAX9P55771 341 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 SERF2P84101 59 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 FLI1Q01543 452 aaPredicted RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 AKR1C1Q04828 323 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 TNFRSF9Q07011 255 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 EIF4EBP1Q13541 118 aaPredicted RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 RHEBQ15382 184 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 GUCA2BQ16661 112 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 Q3ZCU0 254 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 ZNF585BQ52M93 769 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 C5orf24Q7Z6I8 188 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 CD177Q8N6Q3 437 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 Q8TCH9 128 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 FAM222BQ8WU58 562 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 TMEM171Q8WVE6 324 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 PINX1Q96BK5 328 aaKnown RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 BSCL2Q96G97 398 aaPredicted RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 YPEL2Q96QA6 119 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 CLCC1Q96S66 551 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 GPHA2Q96T91 129 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 EIF5A2Q9GZV4 153 aaKnown RBP5.55□□□□□ -1.52
USP28-206ENST00000538224 SLC35B3Q9H1N7 401 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 TMEM231Q9H6L2 316 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 NGBQ9NPG2 151 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 KCNJ16Q9NPI9 418 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 COQ3Q9NZJ6 369 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 RNF7Q9UBF6 113 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 FZR1Q9UM11 496 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 SSUH2Q9Y2M2 353 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 PRELID3BQ9Y3B1 194 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 FAM96BQ9Y3D0 163 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 TIMM9Q9Y5J7 89 aa5.55□□□□□ -1.52
USP28-206ENST00000538224 RAI1Q7Z5J4 1906 aaPredicted RBP5.54□□□□□ -1.52
USP28-206ENST00000538224 DSCAML1Q8TD84 2053 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 IGKV1D-17A0A075B6S4 117 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 TRAV1-1A0A0B4J248 108 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 TRAV39A0A0B4J263 110 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 IGHV3-64DA0A0J9YX35 117 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 NKX6-3A6NJ46 265 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 LRRC30A6NM36 301 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 FAM157AC9JC47 383 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 C16orf97H3BN30 126 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 C15orf65H3BRN8 121 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 H7C2Y5 167 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 AGPAT2O15120 278 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 WISP2O76076 250 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 TMEM50AO95807 157 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 LHBP01229 141 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 IFNA1P01562 189 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 MBP02144 154 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 CD55P08174 381 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 P0C879 139 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 TNFRSF1AP19438 455 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 PTAFRP25105 342 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 CD40P25942 277 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 SSTR5P35346 364 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 PPP1CCP36873 323 aaKnown RBP5.54□□□□□ -1.52
USP28-206ENST00000538224 TAGLN2P37802 199 aaKnown RBP5.54□□□□□ -1.52
USP28-206ENST00000538224 GPR12P47775 334 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 GLIPR1P48060 266 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 PPT1P50897 306 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 TDGF1P3P51864 188 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 UCNP55089 124 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 UBE2KP61086 200 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 ERVK-16P61578 105 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 RPP30P78346 268 aaKnown RBP5.54□□□□□ -1.52
USP28-206ENST00000538224 TNFAIP6P98066 277 aaPredicted RBP5.54□□□□□ -1.52
USP28-206ENST00000538224 ANKRD39Q53RE8 183 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 ATRAIDQ6UW56 229 aa5.54□□□□□ -1.52
USP28-206ENST00000538224 CLEC9AQ6UXN8 241 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms