RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LRTM2Q8N967 370 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 GLYATL2Q8WU03 294 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 PCNPQ8WW12 178 aaKnown RBP9.92□□□□□ -0.82
CLIP1-208ENST00000537004 SLC5A7Q9GZV3 580 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 CHODLQ9H9P2 273 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 TRAPPC2LQ9UL33 140 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 GPR31O00270 319 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 PHF1O43189 567 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-208ENST00000537004 KCNAB3O43448 404 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 BCL2L11O43521 198 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 CRLF1O75462 422 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 B3GALNT1O75752 331 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 SPDEFO95238 335 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 ZP3P21754 424 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 LMO1P25800 156 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 CD200P41217 278 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 RAB32Q13637 225 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 PRSS54Q6PEW0 395 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 FAM219AQ8IW50 185 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 H1FOOQ8IZA3 346 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-208ENST00000537004 IL1F10Q8WWZ1 152 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 TP53RKQ96S44 253 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 OR5AC2Q9NZP5 309 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 KIF25Q9UIL4 384 aa9.91□□□□□ -0.82
CLIP1-208ENST00000537004 YLPM1P49750 1951 aaKnown RBP9.91□□□□□ -0.82
CLIP1-208ENST00000537004 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.91□□□□□ -0.822e-6■■□□□ 13.9
CLIP1-208ENST00000537004 C3orf85A0A1B0GTC6 90 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 NPIPB11E5RHQ5 1161 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 PPIHO43447 177 aaKnown RBP9.9□□□□□ -0.82
CLIP1-208ENST00000537004 PTBP3O95758 552 aaKnown RBP9.9□□□□□ -0.82
CLIP1-208ENST00000537004 PET100P0DJ07 73 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 LYL1P12980 280 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 S100A10P60903 97 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 RND3P61587 244 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 AVPI1Q5T686 147 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 CYB5R2Q6BCY4 276 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 TBC1D26Q86UD7 250 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 LGI3Q8N145 548 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 SCARB1Q8WTV0 552 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 LRRC29Q8WV35 223 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 RRNAD1Q96FB5 475 aaKnown RBP9.9□□□□□ -0.82
CLIP1-208ENST00000537004 SAP30LQ9HAJ7 183 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 MBNL3Q9NUK0 354 aaKnown RBP9.9□□□□□ -0.82
CLIP1-208ENST00000537004 DCAF16Q9NXF7 216 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 OR2W1Q9Y3N9 320 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 WIPI2Q9Y4P8 454 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 KIAA1324LA8MWY0 1029 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-208ENST00000537004 TGFAP01135 160 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 GPR6P46095 362 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-208ENST00000537004 UBA52P62987 128 aaKnown RBP9.9□□□□□ -0.82
CLIP1-208ENST00000537004 IL17RELQ6ZVW7 336 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 LYZL2Q7Z4W2 148 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 PRR18Q8N4B5 295 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 CCL17Q92583 94 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 TMEM222Q9H0R3 208 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 CCL28Q9NRJ3 127 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 MED9Q9NWA0 146 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 OR1A1Q9P1Q5 309 aa9.9□□□□□ -0.82
CLIP1-208ENST00000537004 IGHV1-69-2A0A0G2JMI3 117 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 TMEM30CPA0ZSE6 113 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 HSD17B6O14756 317 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 TFF1P04155 84 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 SRPXP78539 464 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 HMGN3Q15651 99 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 FOXRED2Q8IWF2 684 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 CMTM1Q8IZ96 169 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 ST8SIA2Q92186 375 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 OR2V2Q96R30 315 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 IFNL4K9M1U5 179 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 RLN2P04090 185 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 TMEM33P57088 247 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 COL10A1Q03692 680 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 SLC35E4Q6ICL7 350 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 OR1S1Q8NH92 325 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 CLDND2Q8NHS1 167 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 UBALD1Q8TB05 177 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 MEGF10Q96KG7 1140 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 GPHA2Q96T91 129 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 ZNF471Q9BX82 626 aaPredicted RBP9.89□□□□□ -0.83
CLIP1-208ENST00000537004 SHARPINQ9H0F6 387 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 TAF9BQ9HBM6 251 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 LPAR2Q9HBW0 351 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 UBE2J1Q9Y385 318 aaPredicted RBP9.89□□□□□ -0.83
CLIP1-208ENST00000537004 SESN1Q9Y6P5 492 aa9.89□□□□□ -0.83
CLIP1-208ENST00000537004 SRRM5B3KS81 715 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-208ENST00000537004 HSPA12AO43301 675 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 EGR1P18146 543 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 NUP62P37198 522 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-208ENST00000537004 OR3A1P47881 315 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 LUMP51884 338 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-208ENST00000537004 MRPS11P82912 194 aaKnown RBP9.88□□□□□ -0.83
CLIP1-208ENST00000537004 AESQ08117 197 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 TMEM268Q5VZI3 342 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 SLC35G3Q8N808 338 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 COQ2Q96H96 371 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 KCNIP1Q9NZI2 227 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 METRNQ9UJH8 293 aa9.88□□□□□ -0.83
CLIP1-208ENST00000537004 MSGN1A6NI15 193 aa9.87□□□□□ -0.83
CLIP1-208ENST00000537004 KRBOX1C9JBD0 128 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms