RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 URM1Q9BTM9 101 aaKnown RBP11.48□□□□□ -0.57
VPS28-215ENST00000531924 RIMS4Q9H426 269 aaPredicted RBP11.48□□□□□ -0.57
VPS28-215ENST00000531924 SLC23A1Q9UHI7 598 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 SCOCQ9UIL1 159 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 A3GALT2U3KPV4 340 aa11.48□□□□□ -0.57
VPS28-215ENST00000531924 A0A1W2PN81 502 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 BPNT1O95861 308 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 IGLV1-40P01703 118 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 CD40LGP29965 261 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 CHRNA7P36544 502 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 TMEM267Q0VDI3 215 aaPredicted RBP11.47□□□□□ -0.57
VPS28-215ENST00000531924 SPHARQ15513 63 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 OGFRL1Q5TC84 451 aaPredicted RBP11.47□□□□□ -0.57
VPS28-215ENST00000531924 ZNF660Q6AZW8 331 aaPredicted RBP11.47□□□□□ -0.57
VPS28-215ENST00000531924 LRRTM1Q86UE6 522 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 SVOPQ8N4V2 548 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 OR6M1Q8NGM8 313 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 MYOZ3Q8TDC0 251 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 FBLIM1Q8WUP2 373 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 CYYR1Q96J86 154 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 IFI27L2Q9H2X8 130 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 GHITMQ9H3K2 345 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 PLGRKTQ9HBL7 147 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 RNF150Q9ULK6 438 aa11.47□□□□□ -0.57
VPS28-215ENST00000531924 FOXA2Q9Y261 457 aaPredicted RBP11.47□□□□□ -0.57
VPS28-215ENST00000531924 LSM4Q9Y4Z0 139 aaKnown RBP11.47□□□□□ -0.57
VPS28-215ENST00000531924 OR5H14A6NHG9 310 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 I3L521 148 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 OVOL1O14753 267 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 ARSBP15848 533 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 ZBTB25P24278 435 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 GNB1P62873 340 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 RUNX1Q01196 453 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 RPL39P5Q59GN2 51 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 RNLSQ5VYX0 342 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 ZNF429Q86V71 674 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 EDARADDQ8WWZ3 215 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 UFD1Q92890 307 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 ASCL2Q99929 193 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 NICN1Q9BSH3 213 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 TM2D1Q9BX74 207 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 FBXL15Q9H469 300 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 FKBP14Q9NWM8 211 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 MGAT4AQ9UM21 535 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 WASHC3Q9Y3C0 194 aa11.46□□□□□ -0.57
VPS28-215ENST00000531924 RRHO14718 337 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 SLC22A1O15245 554 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 SAP30O75446 220 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 RBBP9O75884 186 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 NDUFA3O95167 84 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 NAPSAO96009 420 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 HSMCR30P0CW71 290 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 CEACAM6P40199 344 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 CX3CL1P78423 397 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 P2RY14Q15391 338 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 LIPKQ5VXJ0 399 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 GLDNQ6ZMI3 551 aaPredicted RBP11.45□□□□□ -0.58
VPS28-215ENST00000531924 TCTEX1D1Q8N7M0 179 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 MINDY2Q8NBR6 621 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 DCUN1D4Q92564 292 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 TMEM203Q969S6 136 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 ABHD14BQ96IU4 210 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 KCNK15Q9H427 330 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 ZNF221Q9UK13 617 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 SMAD5-AS1Q9Y6J3 95 aa11.45□□□□□ -0.58
VPS28-215ENST00000531924 TMEM14DPA8MWL7 114 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 LINC01619G3V211 115 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 CASQ2O14958 399 aaPredicted RBP11.44□□□□□ -0.58
VPS28-215ENST00000531924 UCHL1P09936 223 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 CT45A6P0DMU7 189 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 CT45A5P0DMU8 189 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 CT45A7P0DMV0 189 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 CPEP16870 476 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 RANBP1P43487 201 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 MRPS15P82914 257 aaKnown RBP11.44□□□□□ -0.58
VPS28-215ENST00000531924 UNC119Q13432 240 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 KIAA0141Q14154 515 aaPredicted RBP11.44□□□□□ -0.58
VPS28-215ENST00000531924 RAB11BQ15907 218 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 ACTBL2Q562R1 376 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 PYHIN1Q6K0P9 492 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 ZNF880Q6PDB4 577 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 PPP1R27Q86WC6 154 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 CLCC1Q96S66 551 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 TSNAXQ99598 290 aaKnown RBP11.44□□□□□ -0.58
VPS28-215ENST00000531924 ISYNA1Q9NPH2 558 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 C12orf4Q9NQ89 552 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 METTL1Q9UBP6 276 aaKnown RBP11.44□□□□□ -0.58
VPS28-215ENST00000531924 AK3Q9UIJ7 227 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 TPRKBQ9Y3C4 175 aa11.44□□□□□ -0.58
VPS28-215ENST00000531924 H0YJW9 148 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 ITGB1BP1O14713 200 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 SOCS1O15524 211 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 ARL6IP5O75915 188 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 LGALS1P09382 135 aaKnown RBP11.43□□□□□ -0.58
VPS28-215ENST00000531924 HLA-DRB3P79483 266 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 TRAM1Q15629 374 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 UNQ5815/PRO19632Q6UWF5 114 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 CASTOR1Q8WTX7 329 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 RNF5Q99942 180 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 C11orf54Q9H0W9 315 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms