RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ADRA1AP35348 466 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 EDDM3BP56851 147 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 CACNG7P62955 275 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 MESP2Q0VG99 397 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 CST6Q15828 149 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 SPATA31B1PQ5VZV4 182 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 DMKNQ6E0U4 476 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 MRGPREQ86SM8 312 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 HOGA1Q86XE5 327 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 LRRC75AQ8NAA5 344 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 OR5P3Q8WZ94 311 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 WBP2Q969T9 261 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 COQ2Q96H96 371 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 DUX5Q96PT3 197 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 ALKBH3Q96Q83 286 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 SCGB3A1Q96QR1 104 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 FIZ1Q96SL8 496 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 AGMATQ9BSE5 352 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 SARGQ9BW04 601 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 PHF7Q9BWX1 381 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 GKN1Q9NS71 199 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 ZNF355PQ9NSJ1 428 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 HCFC1R1Q9NWW0 138 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 C19orf53Q9UNZ5 99 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 YBX2Q9Y2T7 364 aaKnown RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 KLF2Q9Y5W3 355 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 UBR2Q8IWV8 1755 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TRAV8-7A0A075B6U6 113 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TRAV1-1A0A0B4J248 108 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 M0R2P5 195 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TAX1BP3O14907 124 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 CER1O95813 267 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 NAPSAO96009 420 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 ZNF688P0C7X2 276 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 IAPPP10997 89 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 DRD3P35462 400 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 CLDN10P78369 228 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TFF2Q03403 129 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 SOWAHAQ2M3V2 549 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 ASCL5Q7RTU5 278 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 SPEM1Q8N4L4 309 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TMEM255BQ8WV15 326 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 RNF125Q96EQ8 232 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TNFRSF13CQ96RJ3 184 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 RHNO1Q9BSD3 238 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 C1QTNF4Q9BXJ3 329 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 APOBEC3GQ9HC16 384 aaKnown RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 WFDC1Q9HC57 220 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 SDF2L1Q9HCN8 221 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 NRN1Q9NPD7 142 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 PGPEP1Q9NXJ5 209 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 UFC1Q9Y3C8 167 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 Q9Y3F1 56 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 COL4A5P29400 1685 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 C17orf105B2RV13 164 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 MRPL33O75394 65 aaKnown RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 HYPMO75409 117 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 IGHV2-70P01814 119 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 HBDP02042 147 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 CFHP08603 1231 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 HOXC4P09017 264 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 CNTFRP26992 372 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 CEACAM6P40199 344 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 YPEL5P62699 121 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 HOXA4Q00056 320 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 PLAURQ03405 335 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 RBMY1FQ15415 496 aaKnown RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 FAM53AQ6NSI3 398 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 VHLLQ6RSH7 139 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 ZNF788Q6ZQV5 615 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 LRRC75A-AS1Q8N1F1 130 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 MRPL43Q8N983 215 aaKnown RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 OR11G2Q8NGC1 345 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 UBE2WQ96B02 151 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 CTHRC1Q96CG8 243 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 ABHD17AQ96GS6 310 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 EAF1Q96JC9 268 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 HIST1H2BLQ99880 126 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 OR2H1Q9GZK4 316 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 PBOV1Q9GZY1 135 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 SLC25A22Q9H936 323 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 HINT3Q9NQE9 182 aaKnown RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 FSCN3Q9NQT6 498 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TNFRSF19Q9NS68 423 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 SLC25A10Q9UBX3 287 aaPredicted RBP3.12□□□□□ -1.91
USP53-205ENST00000509769 DAPP1Q9UN19 280 aa3.12□□□□□ -1.91
USP53-205ENST00000509769 TRAV27A0A087WT01 109 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 ZNF815PA8K554 130 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 K7ESF4 209 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 FCGR3BO75015 233 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 GJB3O75712 270 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 SMIM10L2AP0DMW4 78 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 SMIM10L2BP0DMW5 78 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 GABRG2P18507 467 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 CA6P23280 308 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 CD40P25942 277 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 HTR6P50406 440 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 LGALS4P56470 323 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 LILRA4P59901 499 aa3.11□□□□□ -1.91
USP53-205ENST00000509769 ZNF585BQ52M93 769 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms