RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 ZNF439Q8NDP4 499 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 OR2T10Q8NGZ9 312 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 CT45A3Q8NHU0 189 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 ST6GALNAC5Q9BVH7 336 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 GHITMQ9H3K2 345 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 ZNF702PQ9H963 129 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 NDUFA13Q9P0J0 144 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 RSL24D1Q9UHA3 163 aaKnown RBP13.11□□□□□ -0.31
SF3A1-209ENST00000496189 SLC23A1Q9UHI7 598 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 ZNF230Q9UIE0 474 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-209ENST00000496189 SIGLEC9Q9Y336 463 aa13.11□□□□□ -0.31
SF3A1-209ENST00000496189 FAM90A9PA6NNJ1 464 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 SLC31A2O15432 143 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 RGS5O15539 181 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 HPGDSO60760 199 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 SCTP09683 121 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 CTXN2P0C2S0 81 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 CD1BP29016 333 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 CEACAM6P40199 344 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 ZNF137PP52743 207 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 DIAPH2-AS1Q14236 149 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 GNMTQ14749 295 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 HERPUD1Q15011 391 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 C9orf152Q5JTZ5 239 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 Q6ZPA2 131 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 Q8N2B8 174 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 OR10J5Q8NHC4 309 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 DYNC2LI1Q8TCX1 351 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 NUDCD2Q8WVJ2 157 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 CFHR4Q92496 578 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 S1PR3Q99500 378 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 PIPOXQ9P0Z9 390 aa13.1□□□□□ -0.31
SF3A1-209ENST00000496189 ITGB1BP1O14713 200 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 LANCL1O43813 399 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 EIF4EP06730 217 aaKnown RBP13.09□□□□□ -0.31
SF3A1-209ENST00000496189 ELK1P19419 428 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 ZNF134P52741 427 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 TAS2R20P59543 309 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 BLCAPP62952 87 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 HNF4GQ14541 408 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 ABCA11PQ4W5N1 156 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 C15orf40Q8WUR7 153 aa13.09□□□□□ -0.31
SF3A1-209ENST00000496189 ELF5Q9UKW6 265 aaPredicted RBP13.09□□□□□ -0.31
SF3A1-209ENST00000496189 MRPS7Q9Y2R9 242 aaKnown RBP13.09□□□□□ -0.31
SF3A1-209ENST00000496189 NCBP2LA6PVI3 153 aaKnown RBP13.08□□□□□ -0.32
SF3A1-209ENST00000496189 RAB29O14966 203 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 BET1O15155 118 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 FGF16O43320 207 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 MOSP00540 346 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 GSTT2P0CG29 244 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 GSTT2BP0CG30 244 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 PRSS3P35030 304 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 HABP2Q14520 560 aaPredicted RBP13.08□□□□□ -0.32
SF3A1-209ENST00000496189 C2orf68Q2NKX9 166 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 FAM53AQ6NSI3 398 aaPredicted RBP13.08□□□□□ -0.32
SF3A1-209ENST00000496189 C5orf24Q7Z6I8 188 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 MAFIPQ8WZ33 124 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 ST6GALNAC6Q969X2 333 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 GINS4Q9BRT9 223 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 IFT46Q9NQC8 304 aa13.08□□□□□ -0.32
SF3A1-209ENST00000496189 IGHV3-72A0A0B4J1Y9 119 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 SSX5O60225 188 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 TPPPO94811 219 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 SRSF4Q08170 494 aaKnown RBP13.07□□□□□ -0.32
SF3A1-209ENST00000496189 PRR31Q5SQ13 230 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 FAM71F2Q6NXP2 309 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 CNIH2Q6PI25 160 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 OR8H1Q8NGG4 311 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 CABLES2Q9BTV7 478 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 RBM38Q9H0Z9 239 aaKnown RBP13.07□□□□□ -0.32
SF3A1-209ENST00000496189 OR1A1Q9P1Q5 309 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 ANXA10Q9UJ72 324 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 ZNF221Q9UK13 617 aa13.07□□□□□ -0.32
SF3A1-209ENST00000496189 TRBV6-7A0A0A0MS04 114 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 ST8SIA5O15466 376 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 FBXO24O75426 580 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 ARPC4P59998 168 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 EBI3Q14213 229 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 IGSF11Q5DX21 431 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 CENPVQ7Z7K6 275 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-209ENST00000496189 BEST4Q8NFU0 473 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 MCFD2Q8NI22 146 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 EAF1Q96JC9 268 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-209ENST00000496189 RASL11BQ9BPW5 248 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 C6orf62Q9GZU0 229 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-209ENST00000496189 SCPEP1Q9HB40 452 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 SERTAD4Q9NUC0 356 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 RDH8Q9NYR8 311 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 RABL2AQ9UBK7 228 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-209ENST00000496189 EXTL2Q9UBQ6 330 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 RABL2BQ9UNT1 228 aa13.06□□□□□ -0.32
SF3A1-209ENST00000496189 RBM7Q9Y580 266 aaKnown RBP13.06□□□□□ -0.32
SF3A1-209ENST00000496189 SAA2-SAA4A0A096LPE2 208 aa13.05□□□□□ -0.32
SF3A1-209ENST00000496189 IGKV1-6A0A0C4DH72 117 aa13.05□□□□□ -0.32
SF3A1-209ENST00000496189 SAA2P0DJI9 122 aaPredicted RBP13.05□□□□□ -0.32
SF3A1-209ENST00000496189 LSAMPQ13449 338 aa13.05□□□□□ -0.32
SF3A1-209ENST00000496189 HOGA1Q86XE5 327 aa13.05□□□□□ -0.32
SF3A1-209ENST00000496189 DGCR14Q96DF8 476 aaKnown RBP13.05□□□□□ -0.32
SF3A1-209ENST00000496189 SLIRPQ9GZT3 109 aaKnown RBP13.05□□□□□ -0.32
SF3A1-209ENST00000496189 TOLLIPQ9H0E2 274 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms