RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 PROCRQ9UNN8 238 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 CNOT1A5YKK6 2376 aaKnown RBP9.4□□□□□ -0.9
CHMP3-209ENST00000494623 DEFB108AA8MXU0 73 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 C1orf196B1AJZ1 125 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 MT-ND4LP03901 98 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 SRP19P09132 144 aaKnown RBP9.4□□□□□ -0.9
CHMP3-209ENST00000494623 PTAFRP25105 342 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 RAB5BP61020 215 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 UBE2KP61086 200 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 HNF4GQ14541 408 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 LTC4SQ16873 150 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 ZNF525Q8N782 197 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 KDF1Q8NAX2 398 aaPredicted RBP9.4□□□□□ -0.9
CHMP3-209ENST00000494623 C1orf162Q8NEQ5 155 aaPredicted RBP9.4□□□□□ -0.9
CHMP3-209ENST00000494623 STARD4Q96DR4 205 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 C5orf30Q96GV9 206 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 EGLN1Q9GZT9 426 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 SMDT1Q9H4I9 107 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 DUSP13Q9UII6 198 aa9.4□□□□□ -0.9
CHMP3-209ENST00000494623 IGHV2OR16-5A0A0B4J2B6 119 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 IGHV1-18A0A0C4DH31 117 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 OR5H1A6NKK0 313 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 TNFSF13O75888 250 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 SCAF4O95104 1147 aaKnown RBP9.4□□□□□ -0.91
CHMP3-209ENST00000494623 SSTR5P35346 364 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 HOXA1P49639 335 aaPredicted RBP9.4□□□□□ -0.91
CHMP3-209ENST00000494623 LINC00205P59089 165 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 ICAM4Q14773 271 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 RHEBQ15382 184 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 OR8G2PQ6IF36 304 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 LCN15Q6UWW0 184 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 TCTEX1D2Q8WW35 142 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 DCTN5Q9BTE1 182 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 RBKSQ9H477 322 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 TUBA4BQ9H853 241 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 RPRMQ9NS64 109 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 DKK4Q9UBT3 224 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 MMP24Q9Y5R2 645 aa9.4□□□□□ -0.91
CHMP3-209ENST00000494623 OTOGLQ3ZCN5 2332 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 hCG_1809904A0A1W2PP81 198 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 A0A1W2PR64 198 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 A0A1W2PRV1 198 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 AHRRA9YTQ3 701 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 H3BQ15 152 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 ATXN7O15265 892 aaPredicted RBP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 CLDN1O95832 211 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 FOLR2P14207 255 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 KITLGP21583 273 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 SNRPEP62304 92 aaKnown RBP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 HBG1P69891 147 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 HBG2P69892 147 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 EDDM3AQ14507 147 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 SP5Q6BEB4 398 aaPredicted RBP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 ADAM5Q6NVV9 412 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 CYB561D1Q8N8Q1 229 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 OR2Z1Q8NG97 314 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 OR13A1Q8NGR1 328 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 CLDND2Q8NHS1 167 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 PLPPR2Q96GM1 343 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 OR4C12Q96R67 309 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF71Q9NQZ8 489 aaPredicted RBP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 GNG13Q9P2W3 67 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 KLF2Q9Y5W3 355 aaPredicted RBP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 C17orf98A8MV24 154 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 C1QTNF9BB2RNN3 333 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 EIF3GO75821 320 aaKnown RBP eCLIP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 S1PR2O95136 353 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 HBE1P02100 147 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 PAX6P26367 422 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 DPPA3Q6W0C5 159 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 BHLHA15Q7RTS1 189 aaPredicted RBP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 LRRC29Q8WV35 223 aa9.39□□□□□ -0.91
CHMP3-209ENST00000494623 RBMXL1Q96E39 390 aaKnown RBP9.39□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF727A8MUV8 499 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 FGF8P55075 233 aaPredicted RBP9.38□□□□□ -0.91
CHMP3-209ENST00000494623 RPS16P62249 146 aaKnown RBP9.38□□□□□ -0.91
CHMP3-209ENST00000494623 LRRC75BQ2VPJ9 315 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF429Q86V71 674 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 LRP11Q86VZ4 500 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 CD177Q8N6Q3 437 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 ZBTB34Q8NCN2 500 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 UNKLQ9H9P5 680 aaKnown RBP9.38□□□□□ -0.91
CHMP3-209ENST00000494623 HEATR1Q9H583 2144 aaKnown RBP9.38□□□□□ -0.91
CHMP3-209ENST00000494623 BOD1L1Q8NFC6 3051 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 ZFP92A6NM28 416 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 OR2C1O95371 312 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 IGLV1-44P01699 117 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 CD55P08174 381 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 RAB5AP20339 215 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 PRDX2P32119 198 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 TAGLN2P37802 199 aaKnown RBP9.38□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF83P51522 516 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 ELLP55199 621 aaPredicted RBP9.38□□□□□ -0.91
CHMP3-209ENST00000494623 TNFRSF9Q07011 255 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 SMIM21Q3B7S5 101 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 RNF212Q495C1 297 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF506Q5JVG8 444 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 BEND4Q6ZU67 534 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 SEM1Q6ZVN7 128 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 ZADH2Q8N4Q0 377 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms