RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 TMEM52Q8NDY8 209 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 FDCSPQ8NFU4 85 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 ELOVL5Q9NYP7 299 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 DDX60LQ5H9U9 1706 aaKnown RBP11.36□□□□□ -0.59
COL6A3-212ENST00000491769 IGHV3OR16-13A0A075B7E8 117 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 IGHV3-74A0A0B4J1X5 117 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 SNURFLB1AK76 121 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 GPR82Q96P67 336 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 ANGPTL4Q9BY76 406 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 VAX2Q9UIW0 290 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 IGHV3-66A0A0C4DH42 116 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 C9JCJ5 164 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 SUCLG1P53597 346 aaKnown RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 ACSF3Q4G176 576 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 UBE2DNLQ8IWF7 75 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 FOXD3Q9UJU5 478 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 ANKRD20A5PA0PJZ0 165 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 M0R143 59 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 ALX3O95076 343 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 ACAA1P09110 424 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 FXYD3Q14802 87 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 C2orf83Q53S99 150 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 OR4A47Q6IF82 309 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 IL36RNQ9UBH0 155 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 ECM29Q5VYK3 1845 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 ADAT3Q96EY9 351 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 RALYQ9UKM9 306 aaKnown RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 CD74P04233 296 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 APOBEC3AP31941 199 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 CKS2P33552 79 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 PSG9Q00887 426 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 SURF2Q15527 256 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 NSUN5P1Q3KNT7 163 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 RNF133Q8WVZ7 376 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 C7orf69Q9H7B7 122 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 A0A1W2PPC1 479 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 RND2P52198 227 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 TMEM101Q96IK0 257 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 NEU1Q99519 415 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 GEMIN7Q9H840 131 aaKnown RBP11.35□□□□□ -0.59
COL6A3-212ENST00000491769 GLI3P10071 1580 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 A0A1W2PPV9 198 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 EPOPA6NHQ4 379 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 PGA4P0DJD7 388 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 PGA5P0DJD9 388 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 GCSAMLQ5JQS6 135 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 PXMP4Q9Y6I8 212 aa11.35□□□□□ -0.59
COL6A3-212ENST00000491769 CLLU1Q5K131 121 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 BPIFA4PQ86YQ2 179 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 ADAD2Q8NCV1 583 aaKnown RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 OR4C13Q8NGP0 309 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 SP7Q8TDD2 431 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 JMJD8Q96S16 334 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 BRWD1Q9NSI6 2320 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 IFITM10A6NMD0 228 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 AP4M1O00189 453 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 LGALS3P17931 250 aaKnown RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 FGF9P31371 208 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 SUMO2P61956 95 aaKnown RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 DEFB121Q5J5C9 76 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 ZNF645Q8N7E2 425 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 C12orf57Q99622 126 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 NPVFQ9HCQ7 196 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 MYH14Q7Z406 1995 aaKnown RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 ZNF831Q5JPB2 1677 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 C1QAP02745 245 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 RPLP1P05386 114 aaKnown RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 COX6CP09669 75 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 LINC00299Q6ZSB3 139 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 GALNT14Q96FL9 552 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 MEGF10Q96KG7 1140 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 SSBP3Q9BWW4 388 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 CIRBPQ14011 172 aaKnown RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 FAM159AQ6UWV7 190 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 SGMS2Q8NHU3 365 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 ABHD17AQ96GS6 310 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 KLK15Q9H2R5 256 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 DOCK1Q14185 1865 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 NHSQ6T4R5 1651 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 TRAV30A0A087WSZ9 112 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 IGHV3-49A0A0A0MS15 119 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 NPIPB11E5RHQ5 1161 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 HINT1P49773 126 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-212ENST00000491769 TMEM74BQ9NUR3 256 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 ZFP30Q9Y2G7 519 aa11.34□□□□□ -0.59
COL6A3-212ENST00000491769 ITGB4P16144 1822 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 GALP22466 123 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 FAM27BQ5VT28 67 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 BHLHA9Q7RTU4 235 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 DUX3Q96PT4 197 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 ATG101Q9BSB4 218 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 CHRNA10Q9GZZ6 450 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 MSRB3Q8IXL7 192 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 PGPA6NDG6 321 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 KBTBD11O94819 623 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-212ENST00000491769 CD300LDQ6UXZ3 194 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 RAB33BQ9H082 229 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 LNP1A1A4G5 178 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 LRRC3BQ96PB8 259 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms