RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	ZDHHC16	Q969W1	377 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	PKIB	Q9C010	78 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	HOXC12	P31275	282 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	GABRA6	Q16445	453 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	FAM214B	Q7L5A3	538 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	ZNF429	Q86V71	674 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	OPN3	Q9H1Y3	402 aa	Predicted RBP	13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	POLDIP2	Q9Y2S7	368 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	PTBP3	O95758	552 aa	Known RBP	13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	MT-ND4L	P03901	98 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	ACAA1	P09110	424 aa	Predicted RBP	13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	PGA5	P0DJD9	388 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	MDK	P21741	143 aa	Predicted RBP	13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	HOXA1	P49639	335 aa	Predicted RBP	13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	TAS2R30	P59541	319 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	DLK1	P80370	383 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	ICAM4	Q14773	271 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	GMPPA	Q96IJ6	420 aa	Predicted RBP	13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	OR4C12	Q96R67	309 aa		13.22	□□□□□ -0.29
BRD9-208	ENST00000489816	SRP19	P09132	144 aa	Known RBP	13.21	□□□□□ -0.29
BRD9-208	ENST00000489816	CLEC12B	Q2HXU8	276 aa		13.21	□□□□□ -0.29
BRD9-208	ENST00000489816	DEFB109B	Q30KR1	87 aa		13.21	□□□□□ -0.29
BRD9-208	ENST00000489816	ZDHHC11	Q9H8X9	412 aa		13.21	□□□□□ -0.29
BRD9-208	ENST00000489816	COA4	Q9NYJ1	87 aa		13.21	□□□□□ -0.29
BRD9-208	ENST00000489816		A0A1B0GU03	582 aa		13.21	□□□□□ -0.3
BRD9-208	ENST00000489816	C17orf98	A8MV24	154 aa		13.21	□□□□□ -0.3
BRD9-208	ENST00000489816	ST8SIA5	O15466	376 aa		13.21	□□□□□ -0.3
BRD9-208	ENST00000489816	GNPNAT1	Q96EK6	184 aa	Predicted RBP	13.21	□□□□□ -0.3
BRD9-208	ENST00000489816	C5orf30	Q96GV9	206 aa		13.21	□□□□□ -0.3
BRD9-208	ENST00000489816	TMPRSS5	Q9H3S3	457 aa		13.21	□□□□□ -0.3
BRD9-208	ENST00000489816	ZGRF1	Q86YA3	2104 aa		13.21	□□□□□ -0.3
BRD9-208	ENST00000489816	IGHV3OR15-7	A0A075B7D8	119 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	CLEC18A	A5D8T8	446 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	SCAF4	O95104	1147 aa	Known RBP	13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	S1PR2	O95136	353 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	HBZ	P02008	142 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	ERVK11-1	P61568	191 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	FAM201A	Q5SY85	155 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF610	Q8N9Z0	462 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	CLEC18C	Q8NCF0	446 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	TCTEX1D2	Q8WW35	142 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	GALM	Q96C23	342 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	OPA3	Q9H6K4	179 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	KCNIP1	Q9NZI2	227 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	TNC	P24821	2201 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	RD3L	P0DJH9	198 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	KIR2DL2	P43627	348 aa	Predicted RBP	13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	HMGN3	Q15651	99 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF880	Q6PDB4	577 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	COMMD1	Q8N668	190 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	COL8A2	P25067	703 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF726P1	Q15940	193 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF674	Q2M3X9	581 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	SPRN	Q5BIV9	151 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	PDZD11	Q5EBL8	140 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	LRP11	Q86VZ4	500 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	CABLES2	Q9BTV7	478 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	PSG11	Q9UQ72	335 aa		13.2	□□□□□ -0.3
BRD9-208	ENST00000489816	CECR9	P0C854	216 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	LMO1	P25800	156 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	MEOX2	P50222	304 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	TLE4	Q04727	773 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	VKORC1L1	Q8N0U8	176 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	RPRML	Q8N4K4	120 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	LFNG	Q8NES3	379 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	OR13A1	Q8NGR1	328 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	CLDND2	Q8NHS1	167 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	YLPM1	P49750	1951 aa	Known RBP	13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	TGIF2-C20orf24	A0A0A6YYL0	155 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	YIF1A	O95070	293 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	BAX	Q07812	192 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF787	Q6DD87	383 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	OR2Z1	Q8NG97	314 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	LEAP2	Q969E1	77 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	COQ2	Q96H96	371 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	RAB40C	Q96S21	281 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	KIAA1456	Q9P272	454 aa		13.19	□□□□□ -0.3
BRD9-208	ENST00000489816	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	ZG16	O60844	167 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	CXCL1	P09341	107 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	RAC2	P15153	192 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	COL10A1	Q03692	680 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	SRSF7	Q16629	238 aa	Known RBP eCLIP	13.18	□□□□□ -0.3	3e-7	■■■■□ 20.9
BRD9-208	ENST00000489816		Q3ZCU0	254 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	C11orf53	Q8IXP5	236 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF525	Q8N782	197 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	NINJ1	Q92982	152 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	ABCA1	O95477	2261 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	CEBPZOS	A8MTT3	80 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	PRSS44	E7EML9	344 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	SOX15	O60248	233 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	ERVFRD-1	P60508	538 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	C4orf17	Q53FE4	359 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816		Q6ZT83	130 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	SLC25A22	Q9H936	323 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	LIN7C	Q9NUP9	197 aa	Known RBP	13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	RAB2A	P61019	212 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF146	Q15072	292 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	UTF1	Q5T230	341 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	LINC00596	Q86U02	117 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms