RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CD1AP06126 327 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 EGR2P11161 476 aaPredicted RBP9.56□□□□□ -0.88
CPSF3-204ENST00000489403 CELP19835 753 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 RPL39P5Q59GN2 51 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 ZNF660Q6AZW8 331 aaPredicted RBP9.56□□□□□ -0.88
CPSF3-204ENST00000489403 OR10K2Q6IF99 312 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 GLDNQ6ZMI3 551 aaPredicted RBP9.56□□□□□ -0.88
CPSF3-204ENST00000489403 C6orf201Q7Z4U5 140 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 SVOPQ8N4V2 548 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 TCTEX1D1Q8N7M0 179 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 OR6Q1Q8NGQ2 317 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 IL1F10Q8WWZ1 152 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 NEDD4LQ96PU5 975 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 FAAP24Q9BTP7 215 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 PIPOXQ9P0Z9 390 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 ERGIC3Q9Y282 383 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 LRRC42Q9Y546 428 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 NUBP2Q9Y5Y2 271 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 A3GALT2U3KPV4 340 aa9.56□□□□□ -0.88
CPSF3-204ENST00000489403 OR5H14A6NHG9 310 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 TRIM64CA6NLI5 447 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 H0YJW9 148 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 FCN1O00602 326 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 MYL12BO14950 172 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 RAB29O14966 203 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 IGHV3-11P01762 117 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 CT45A6P0DMU7 189 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 CT45A5P0DMU8 189 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 CT45A7P0DMV0 189 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 SNRPBP14678 240 aaKnown RBP9.55□□□□□ -0.88
CPSF3-204ENST00000489403 MAPK3P27361 379 aaPredicted RBP9.55□□□□□ -0.88
CPSF3-204ENST00000489403 WNT4P56705 351 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 INSL4Q14641 139 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 PLGLAQ15195 96 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 TTC23Q5W5X9 447 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 LAIR2Q6ISS4 152 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 ZNF880Q6PDB4 577 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 CD200R1LQ6Q8B3 271 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 SETD9Q8NE22 299 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 THRSPQ92748 146 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 NICN1Q9BSH3 213 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 FAM103A1Q9BTL3 118 aaKnown RBP9.55□□□□□ -0.88
CPSF3-204ENST00000489403 PARP12Q9H0J9 701 aaKnown RBP9.55□□□□□ -0.88
CPSF3-204ENST00000489403 GHITMQ9H3K2 345 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 KCNK15Q9H427 330 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 CNOT2Q9NZN8 540 aaKnown RBP9.55□□□□□ -0.88
CPSF3-204ENST00000489403 ABRACLQ9P1F3 81 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 STEAP1Q9UHE8 339 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 GAB2Q9UQC2 676 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 STAB2Q8WWQ8 2551 aa9.55□□□□□ -0.88
CPSF3-204ENST00000489403 NAPSAO96009 420 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 OR8U9P0C7N5 309 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 UBBP0CG47 229 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 HTR2CP28335 458 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 RPS27AP62979 156 aaKnown RBP9.54□□□□□ -0.88
CPSF3-204ENST00000489403 PITPNAQ00169 270 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 UNC119Q13432 240 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 SRSF7Q16629 238 aaKnown RBP eCLIP9.54□□□□□ -0.88
CPSF3-204ENST00000489403 PYHIN1Q6K0P9 492 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 AHSA2Q719I0 299 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 LRRTM1Q86UE6 522 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 HAPLN4Q86UW8 402 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 ABHD5Q8WTS1 349 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 ABHD14BQ96IU4 210 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 TM2D1Q9BX74 207 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 TMEM59Q9BXS4 323 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 ZMAT4Q9H898 229 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 CHMP1AQ9HD42 196 aaPredicted RBP9.54□□□□□ -0.88
CPSF3-204ENST00000489403 SLC23A1Q9UHI7 598 aa9.54□□□□□ -0.88
CPSF3-204ENST00000489403 CA2P00918 260 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 HSPB1P04792 205 aaKnown RBP9.53□□□□□ -0.88
CPSF3-204ENST00000489403 GSTP1P09211 210 aaKnown RBP9.53□□□□□ -0.88
CPSF3-204ENST00000489403 MC5RP33032 325 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 TPPP2P59282 170 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 TMEM267Q0VDI3 215 aaPredicted RBP9.53□□□□□ -0.88
CPSF3-204ENST00000489403 ACSM3Q53FZ2 586 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 AKIRIN2Q53H80 203 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 ACTBL2Q562R1 376 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 C1orf100Q5SVJ3 147 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 UNQ5815/PRO19632Q6UWF5 114 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 PPP1R27Q86WC6 154 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 DHRSXQ8N5I4 330 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 NANOGP1Q8N7R0 232 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 LFNGQ8NES3 379 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 OR5AN1Q8NGI8 311 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 SETD6Q8TBK2 473 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 FLYWCH2Q96CP2 140 aaKnown RBP9.53□□□□□ -0.88
CPSF3-204ENST00000489403 RHOVQ96L33 236 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 MS4A10Q96PG2 267 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 CLCC1Q96S66 551 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 AGMATQ9BSE5 352 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 GAR1Q9NY12 217 aaKnown RBP9.53□□□□□ -0.88
CPSF3-204ENST00000489403 OR1A1Q9P1Q5 309 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 PSORS1C1Q9UIG5 152 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 RNF150Q9ULK6 438 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 WASHC3Q9Y3C0 194 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 CSMD3Q7Z407 3707 aa9.53□□□□□ -0.88
CPSF3-204ENST00000489403 EPPK1P58107 5090 aaKnown RBP9.52□□□□□ -0.88
CPSF3-204ENST00000489403 A0A0A6YYD4 124 aa9.52□□□□□ -0.89
CPSF3-204ENST00000489403 TMEM14DPA8MWL7 114 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms