RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RANBP3Q9H6Z4 567 aaPredicted RBP6.49□□□□□ -1.37
USP40-216ENST00000485943 FBLN5Q9UBX5 448 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 SPATA2Q9UM82 520 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 MOB4Q9Y3A3 225 aa6.49□□□□□ -1.37
USP40-216ENST00000485943 A0A0A6YYH2 397 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 IGHV3-72A0A0B4J1Y9 119 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 TMEM235A6NFC5 223 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 A6NJ64 397 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 VGLL3A8MV65 326 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 C15orf65H3BRN8 121 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 NDUFA7O95182 113 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 CLEC2LP0C7M8 214 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 MECP2P51608 486 aaKnown RBP6.48□□□□□ -1.37
USP40-216ENST00000485943 SLC35B1P78383 322 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 LSAMPQ13449 338 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 HMGN3Q15651 99 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 PNLIPRP3Q17RR3 467 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 ABCA11PQ4W5N1 156 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 FOXRED2Q8IWF2 684 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 FAM89BQ8N5H3 189 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 GFI1Q99684 422 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 HDHD3Q9BSH5 251 aaPredicted RBP6.48□□□□□ -1.37
USP40-216ENST00000485943 DCUN1D5Q9BTE7 237 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 DCSTAMPQ9H295 470 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 Q9N2K0 584 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 MBNL3Q9NUK0 354 aaKnown RBP6.48□□□□□ -1.37
USP40-216ENST00000485943 NF1P21359 2839 aa6.48□□□□□ -1.37
USP40-216ENST00000485943 A0A0A6YYD4 124 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 IGHV1-3A0A0C4DH29 117 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 J3QRK9 145 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 M0QZ24 198 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 OR2F2O95006 317 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 MOSP00540 346 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 IGLV1-47P01700 117 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 FCGR3AP08637 254 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 SCTP09683 121 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 DTYMKP23919 212 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 CFPP27918 469 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 CD40LGP29965 261 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 RPS19P39019 145 aaKnown RBP6.47□□□□□ -1.37
USP40-216ENST00000485943 RPL5P46777 297 aaKnown RBP6.47□□□□□ -1.37
USP40-216ENST00000485943 DYNLT3P51808 116 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 EFNB2P52799 333 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 HERV-K104P61576 105 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 NCS1P62166 190 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 RPL11P62913 178 aaKnown RBP6.47□□□□□ -1.37
USP40-216ENST00000485943 QRFPP83859 136 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 ZNF816Q0VGE8 651 aaPredicted RBP6.47□□□□□ -1.37
USP40-216ENST00000485943 GNMTQ14749 295 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 MMDQ15546 238 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 RTL8BQ17RB0 113 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 TMEM177Q53S58 311 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 HACD4Q5VWC8 232 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 SLC25A48Q6ZT89 311 aaKnown RBP6.47□□□□□ -1.37
USP40-216ENST00000485943 LYPD6Q86Y78 171 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 LINC00311Q8N616 119 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 C8orf31Q8N9H6 132 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 OR4X2Q8NGF9 303 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 OR13F1Q8NGS4 319 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 SGMS2Q8NHU3 365 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 RAB2BQ8WUD1 216 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 NUDCD2Q8WVJ2 157 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 RTN4IP1Q8WWV3 396 aaPredicted RBP6.47□□□□□ -1.37
USP40-216ENST00000485943 MAFIPQ8WZ33 124 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 YIPF6Q96EC8 236 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 GON7Q9BXV9 100 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 OR2D2Q9H210 308 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 NECAP2Q9NVZ3 263 aa6.47□□□□□ -1.37
USP40-216ENST00000485943 ZNF230Q9UIE0 474 aaPredicted RBP6.47□□□□□ -1.37
USP40-216ENST00000485943 TRBV6-6A0A0A6YYG2 114 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 A6NDX4 124 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 M0R1X1 148 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 KCNAB3O43448 404 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 LANCL1O43813 399 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 NAPSAO96009 420 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 IFNA6P05013 189 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 FCER2P06734 321 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 ZNF182P17025 639 aaPredicted RBP6.46□□□□□ -1.38
USP40-216ENST00000485943 CD1BP29016 333 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 MC5RP33032 325 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 LUMP51884 338 aaPredicted RBP6.46□□□□□ -1.38
USP40-216ENST00000485943 TMEM50BP56557 158 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 TSPAN5P62079 268 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 RPS16P62249 146 aaKnown RBP6.46□□□□□ -1.38
USP40-216ENST00000485943 C2orf68Q2NKX9 166 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 MOGAT2Q3SYC2 334 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 Q6ZSV7 163 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 ANKRD13BQ86YJ7 626 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 SNX29P2Q8IUI4 249 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 DYNAPQ8N1N2 210 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 KLHDC1Q8N7A1 406 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 BEST4Q8NFU0 473 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 C15orf40Q8WUR7 153 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 BORCS5Q969J3 196 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 SLC25A46Q96AG3 418 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 RBM14Q96PK6 669 aaKnown RBP6.46□□□□□ -1.38
USP40-216ENST00000485943 ZNF747Q9BV97 191 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 C6orf62Q9GZU0 229 aaPredicted RBP6.46□□□□□ -1.38
USP40-216ENST00000485943 LINC00574Q9H8X3 128 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 RDH8Q9NYR8 311 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms