RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 LIN54Q6MZP7 749 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 TMEM65Q6PI78 240 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 LCNL1Q6ZST4 164 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 FAM89BQ8N5H3 189 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 FAAP24Q9BTP7 215 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 DUSP21Q9H596 190 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 CHMP1AQ9HD42 196 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 DNAH9Q9NYC9 4486 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 IGHV7-81A0A0B4J1V7 117 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 ATP6V0E1O15342 81 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 RAB25P57735 213 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 HLA-DRB3P79483 266 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 LIPKQ5VXJ0 399 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 ZNF660Q6AZW8 331 aaPredicted RBP9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 OR10K2Q6IF99 312 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 PYHIN1Q6K0P9 492 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 IL1F10Q8WWZ1 152 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 NICN1Q9BSH3 213 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 ANKRD60Q9BZ19 345 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 LPAR5Q9H1C0 372 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 VCX3BQ9H321 246 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 PLGRKTQ9HBL7 147 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 C12orf4Q9NQ89 552 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 VSIG4Q9Y279 399 aa9.47□□□□□ -0.89
SQSTM1-207ENST00000481335 TENM3Q9P273 2699 aa9.46□□□□□ -0.89
SQSTM1-207ENST00000481335 TRAV41A0A0B4J266 112 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 I3L521 148 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 RGS10O43665 173 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 SPDEFO95238 335 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 DIRAS3O95661 229 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 NHLRC4P0CG21 123 aaPredicted RBP9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 CPEP16870 476 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 OR3A3P47888 321 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 AQP4P55087 323 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 TMEM267Q0VDI3 215 aaPredicted RBP9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 DEFB136Q30KP8 78 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 PRSS48Q7RTY5 328 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF491Q8N8L2 437 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 MINDY2Q8NBR6 621 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 OR11H1Q8NG94 326 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 OR5AN1Q8NGI8 311 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 PTX4Q96A99 478 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 DUX3Q96PT4 197 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 AGMATQ9BSE5 352 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 ACOT13Q9NPJ3 140 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 PARP11Q9NR21 331 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 RNF150Q9ULK6 438 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 WASHC3Q9Y3C0 194 aa9.46□□□□□ -0.9
SQSTM1-207ENST00000481335 A0A0A6YYD4 124 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 FOXI3A8MTJ6 420 aaPredicted RBP9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 SEC14L6B5MCN3 397 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 H0YJW9 148 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 RRHO14718 337 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 ST8SIA5O15466 376 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 SERPINB10P48595 397 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 HSPA13P48723 471 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 RAB9AP51151 201 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF616Q08AN1 781 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 P2RY14Q15391 338 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 RAB11BQ15907 218 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 C19orf54Q5BKX5 351 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 CD200R1LQ6Q8B3 271 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 FAM131AQ6UXB0 335 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 TMEM91Q6ZNR0 172 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 OR56B1Q8NGI3 324 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 CENPOQ9BU64 300 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 TOLLIPQ9H0E2 274 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 Q9N2K0 584 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 AK3Q9UIJ7 227 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 BLOC1S6Q9UL45 172 aa9.45□□□□□ -0.9
SQSTM1-207ENST00000481335 G3V318 75 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 ARPC1BO15143 372 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 SOCS1O15524 211 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 HSPA12AO43301 675 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 HSMCR30P0CW71 290 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 CT45A6P0DMU7 189 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 CT45A5P0DMU8 189 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 CT45A7P0DMV0 189 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 CRHBPP24387 322 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 CNTFRP26992 372 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 LUMP51884 338 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 KIAA0141Q14154 515 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 PLGLAQ15195 96 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 TBCEQ15813 527 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 ZNF429Q86V71 674 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 PDPNQ86YL7 162 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 SETD6Q8TBK2 473 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 TMEM203Q969S6 136 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 WWC2-AS2Q96NR7 200 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 GFI1Q99684 422 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 MGLLQ99685 303 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 CMSS1Q9BQ75 279 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 KCNK15Q9H427 330 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 FOXA2Q9Y261 457 aaPredicted RBP9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 LSM4Q9Y4Z0 139 aaKnown RBP9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 V9GY05 133 aa9.44□□□□□ -0.9
SQSTM1-207ENST00000481335 GSTP1P09211 210 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-207ENST00000481335 CALRP27797 417 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms