RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 IGSF11Q5DX21 431 aa12.37□□□□□ -0.43
HMGA1-206ENST00000478214 OR4A4PQ8NGN8 299 aa12.37□□□□□ -0.43
HMGA1-206ENST00000478214 ABHD14BQ96IU4 210 aa12.37□□□□□ -0.43
HMGA1-206ENST00000478214 NABP2Q9BQ15 211 aa12.37□□□□□ -0.43
HMGA1-206ENST00000478214 ZNF251Q9BRH9 671 aa12.37□□□□□ -0.43
HMGA1-206ENST00000478214 AGMATQ9BSE5 352 aa12.37□□□□□ -0.43
HMGA1-206ENST00000478214 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.37□□□□□ -0.43
HMGA1-206ENST00000478214 PLSCR3Q9NRY6 295 aa12.37□□□□□ -0.43
HMGA1-206ENST00000478214 ITGB1BP1O14713 200 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 RAB29O14966 203 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 BET1O15155 118 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 RPS19P39019 145 aaKnown RBP12.36□□□□□ -0.43
HMGA1-206ENST00000478214 SCAND1P57086 179 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 KIR2DS1Q14954 304 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 ARL6IP1Q15041 203 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 C2orf68Q2NKX9 166 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 RPL39P5Q59GN2 51 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 EDARADDQ8WWZ3 215 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 SLC25A38Q96DW6 304 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 CABLES2Q9BTV7 478 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 FUNDC2Q9BWH2 189 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 RDH8Q9NYR8 311 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 PIPOXQ9P0Z9 390 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 RNF150Q9ULK6 438 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 ETV7Q9Y603 341 aa12.36□□□□□ -0.43
HMGA1-206ENST00000478214 IGKV1D-8A0A087WSZ0 117 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 TMEM235A6NFC5 223 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 SCGNO76038 276 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 GSTP1P09211 210 aaKnown RBP12.35□□□□□ -0.43
HMGA1-206ENST00000478214 DTYMKP23919 212 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 ZNF260Q3ZCT1 412 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 HACD4Q5VWC8 232 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 CENPVQ7Z7K6 275 aaPredicted RBP12.35□□□□□ -0.43
HMGA1-206ENST00000478214 Q8N9W7 124 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 OR5AU1Q8NGC0 362 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 OR13F1Q8NGS4 319 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 FAM110DQ8TAY7 271 aaPredicted RBP12.35□□□□□ -0.43
HMGA1-206ENST00000478214 NUDCD2Q8WVJ2 157 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 S1PR3Q99500 378 aa12.35□□□□□ -0.43
HMGA1-206ENST00000478214 CITED2Q99967 270 aaPredicted RBP12.35□□□□□ -0.43
HMGA1-206ENST00000478214 CSF1P09603 554 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 CT45A6P0DMU7 189 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 CT45A5P0DMU8 189 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 CT45A7P0DMV0 189 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 SERPINB10P48595 397 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 F2RL1P55085 397 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 NCS1P62166 190 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 SRSF7Q16629 238 aaKnown RBP eCLIP12.34□□□□□ -0.43
HMGA1-206ENST00000478214 FAM71F2Q6NXP2 309 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 C10orf99Q6UWK7 81 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 GLDNQ6ZMI3 551 aaPredicted RBP12.34□□□□□ -0.43
HMGA1-206ENST00000478214 Q6ZS49 121 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 OR8H1Q8NGG4 311 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 RITA1Q96K30 269 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 MMP27Q9H306 513 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 SPATA2Q9UM82 520 aa12.34□□□□□ -0.43
HMGA1-206ENST00000478214 TRAV18A0A075B6X5 111 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 TRBV6-7A0A0A0MS04 114 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 LINC01548A6NM66 108 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 SSX5O60225 188 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 PROP1O75360 226 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 IGHG2P01859 326 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 GNG2P59768 71 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 ACTBP60709 375 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 VBP1P61758 197 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 NSUN5P1Q3KNT7 163 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 TCTEX1D4Q5JR98 221 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 SLC35E3Q7Z769 313 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 CROCCP3Q8IVE0 287 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 FAM71E2Q8N5Q1 922 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 OR10J5Q8NHC4 309 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 PHF21AQ96BD5 680 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 NOL4LQ96MY1 436 aaPredicted RBP12.33□□□□□ -0.44
HMGA1-206ENST00000478214 RASL11BQ9BPW5 248 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 ST6GALNAC5Q9BVH7 336 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 TOLLIPQ9H0E2 274 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 ABCG5Q9H222 651 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 GHITMQ9H3K2 345 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 LIN7CQ9NUP9 197 aaKnown RBP12.33□□□□□ -0.44
HMGA1-206ENST00000478214 LINC00527Q9UJ94 153 aa12.33□□□□□ -0.44
HMGA1-206ENST00000478214 TET2Q6N021 2002 aaPredicted RBP12.33□□□□□ -0.44
HMGA1-206ENST00000478214 ADARB2-AS1A8MUL3 147 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 TMEM127O75204 238 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 DIRAS3O95661 229 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 OR8U9P0C7N5 309 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 CNTFRP26992 372 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 GPR12P47775 334 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 CD83Q01151 205 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 MMDQ15546 238 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 PNLIPRP3Q17RR3 467 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 FAM131AQ6UXB0 335 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 OR8U1Q8NH10 309 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 NAA50Q9GZZ1 169 aaKnown RBP12.32□□□□□ -0.44
HMGA1-206ENST00000478214 ZNF221Q9UK13 617 aa12.32□□□□□ -0.44
HMGA1-206ENST00000478214 A0A0A6YYH2 397 aa12.31□□□□□ -0.44
HMGA1-206ENST00000478214 A6NJ64 397 aa12.31□□□□□ -0.44
HMGA1-206ENST00000478214 H0YJW9 148 aa12.31□□□□□ -0.44
HMGA1-206ENST00000478214 LINC00205P59089 165 aa12.31□□□□□ -0.44
HMGA1-206ENST00000478214 PITPNAQ00169 270 aa12.31□□□□□ -0.44
HMGA1-206ENST00000478214 ZNF329Q86UD4 541 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms