RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 A1L4Q6 167 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 FCN3O75636 299 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 IGHV3-43DP0DP04 118 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 PAX1P15863 534 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 RPA2P15927 270 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 SSTR2P30874 369 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 GPR12P47775 334 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 GNB2P62879 340 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF273Q14593 569 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 LTC4SQ16873 150 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 ESCO2Q56NI9 601 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 C8orf31Q8N9H6 132 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 OR2T35Q8NGX2 323 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 GLYATL2Q8WU03 294 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 TMEM56Q96MV1 263 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 HSD17B10Q99714 261 aaKnown RBP10.57□□□□□ -0.72
VPS13D-205ENST00000473099 ABHD14AQ9BUJ0 271 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 CHIAQ9BZP6 476 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 NMES1Q9C002 83 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 COMMD9Q9P000 198 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 PIPOXQ9P0Z9 390 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 PSG11Q9UQ72 335 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 TMED3Q9Y3Q3 217 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 TMEM56-RWDD3S4R434 201 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 WNK2Q9Y3S1 2297 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 CRYBG3Q68DQ2 2970 aa10.57□□□□□ -0.72
VPS13D-205ENST00000473099 ARHGAP32A7KAX9 2087 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 C5orf51A6NDU8 294 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 IGLV2-14P01704 120 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 LIPFP07098 398 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 DNASE1P24855 282 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 NFYBP25208 207 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 GZMKP49863 264 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 H2BFSP57053 126 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 DSCR9P59020 149 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 C2orf68Q2NKX9 166 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF695Q8IW36 515 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 FGFRL1Q8N441 504 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 MSI2Q96DH6 328 aaKnown RBP10.56□□□□□ -0.72
VPS13D-205ENST00000473099 TP53RKQ96S44 253 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 AGMATQ9BSE5 352 aa10.56□□□□□ -0.72
VPS13D-205ENST00000473099 SSBP3Q9BWW4 388 aaPredicted RBP10.56□□□□□ -0.72
VPS13D-205ENST00000473099 PARP12Q9H0J9 701 aaKnown RBP10.56□□□□□ -0.72
VPS13D-205ENST00000473099 A0A087X0M5 115 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 A0A1B0GX30 115 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 MEX3AA1L020 520 aaKnown RBP10.55□□□□□ -0.72
VPS13D-205ENST00000473099 C17orf98A8MV24 154 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 RAB29O14966 203 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 NDUFS7O75251 213 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 ATG12O94817 140 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 CDS2O95674 445 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 IGHV4-39P01824 125 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 SERPINE2P07093 398 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 OMGP23515 440 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 DLX6P56179 175 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 PRAMEF5Q5TYX0 476 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 CLEC2AQ6UVW9 174 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 SLC25A48Q6ZT89 311 aaKnown RBP10.55□□□□□ -0.72
VPS13D-205ENST00000473099 LINC00311Q8N616 119 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF439Q8NDP4 499 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 CD300LFQ8TDQ1 290 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 TNFRSF14Q92956 283 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 RBPMSQ93062 196 aaKnown RBP10.55□□□□□ -0.72
VPS13D-205ENST00000473099 ADTRPQ96IZ2 230 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 C18orf12Q96KH6 178 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 C2orf50Q96LR7 162 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 SPIN2AQ99865 258 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 SPIN2BQ9BPZ2 258 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 PIMREGQ9BSJ6 248 aa10.55□□□□□ -0.72
VPS13D-205ENST00000473099 CELSR2Q9HCU4 2923 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 NBPF19A0A087WUL8 3843 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 PPIAL4CA0A0B4J2A2 164 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 FAM25EA8MYX2 175 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 ST8SIA5O15466 376 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 TNFSF12O43508 249 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 SIX6O95475 246 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 IGHV2-5P01817 119 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 HOXB5P09067 269 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 PET100P0DJ07 73 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 PPIAL4GP0DN37 164 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 CCL3L1P16619 93 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 KIR2DS2P43631 304 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 ATP5J2P56134 94 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 EIF4EBP1Q13541 118 aaPredicted RBP10.54□□□□□ -0.72
VPS13D-205ENST00000473099 SP6Q3SY56 376 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 DCAF12L2Q5VW00 463 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 TMEM268Q5VZI3 342 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 HIST2H2BCQ6DN03 193 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 FAM71F2Q6NXP2 309 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF295-AS1Q8N0V1 137 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 PIP4P2Q8N4L2 257 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF525Q8N782 197 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 LY6G5BQ8NDX9 201 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 OR51H1Q8NH63 302 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF596Q8TC21 504 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 FAM168AQ92567 244 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 S1PR3Q99500 378 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 GSX2Q9BZM3 304 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 IFI27L2Q9H2X8 130 aa10.54□□□□□ -0.72
VPS13D-205ENST00000473099 ZFP57Q9NU63 452 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms