RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 FCGR2CP31995 323 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 ACTBP60709 375 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 ACTG1P63261 375 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 FBLN7Q53RD9 439 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 RPL39P5Q59GN2 51 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF660Q6AZW8 331 aaPredicted RBP11.93□□□□□ -0.5
COL9A3-209ENST00000469852 Q8N402 240 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 OR5H2Q8NGV7 314 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 OR8U1Q8NH10 309 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 CREB3L1Q96BA8 519 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 MALSU1Q96EH3 234 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF251Q9BRH9 671 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 THAP7Q9BT49 309 aaPredicted RBP11.93□□□□□ -0.5
COL9A3-209ENST00000469852 TINAGL1Q9GZM7 467 aaPredicted RBP11.93□□□□□ -0.5
COL9A3-209ENST00000469852 ESM1Q9NQ30 184 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 FAM96BQ9Y3D0 163 aa11.93□□□□□ -0.5
COL9A3-209ENST00000469852 AMMECR1Q9Y4X0 333 aaPredicted RBP11.93□□□□□ -0.5
COL9A3-209ENST00000469852 A0A1W2PPI3 338 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF736B4DX44 427 aaPredicted RBP11.92□□□□□ -0.5
COL9A3-209ENST00000469852 ITGB1BP1O14713 200 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 HSD17B6O14756 317 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 PROP1O75360 226 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 RAB13P51153 203 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF137PP52743 207 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 TAS2R46P59540 309 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 SRSF2Q01130 221 aaKnown RBP11.92□□□□□ -0.5
COL9A3-209ENST00000469852 DYRK1AQ13627 763 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 BAK1Q16611 211 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 FAAP20Q6NZ36 180 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 Q6YL49 198 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 TMEM229BQ8NBD8 167 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 EDARADDQ8WWZ3 215 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 TOMM40LQ969M1 308 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 DUX5Q96PT3 197 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 MEGF9Q9H1U4 602 aa11.92□□□□□ -0.5
COL9A3-209ENST00000469852 COL6A5A8TX70 2615 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 ANKRD20A5PA0PJZ0 165 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 HOXA3O43365 443 aaPredicted RBP11.91□□□□□ -0.5
COL9A3-209ENST00000469852 IGHV4-59P01825 116 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 CD74P04233 296 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 CD24P25063 80 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 LINC00205P59089 165 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF45Q02386 682 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 SSBP1Q04837 148 aaKnown RBP11.91□□□□□ -0.5
COL9A3-209ENST00000469852 LINC00299Q6ZSB3 139 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 PIFOQ8TCI5 191 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 RTN4IP1Q8WWV3 396 aaPredicted RBP11.91□□□□□ -0.5
COL9A3-209ENST00000469852 RPEQ96AT9 228 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 OR2D2Q9H210 308 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 OR2W1Q9Y3N9 320 aa11.91□□□□□ -0.5
COL9A3-209ENST00000469852 PPYP01298 95 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 IGLV2-14P01704 120 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 CSF1P09603 554 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 CEACAM3P40198 252 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 IER3P46695 156 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 RAB7AP51149 207 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 TAS2R19P59542 299 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF816Q0VGE8 651 aaPredicted RBP11.9□□□□□ -0.5
COL9A3-209ENST00000469852 VAX1Q5SQQ9 334 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 STEAP1BQ6NZ63 245 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 DHRS11Q6UWP2 260 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF833PQ6ZTB9 187 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 ZDHHC22Q8N966 263 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 GDPD1Q8N9F7 314 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 OR4C16Q8NGL9 310 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 SPATA3Q8NHX4 192 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 GIMAP1Q8WWP7 306 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 CFHR4Q92496 578 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 ZDHHC16Q969W1 377 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 SSX3Q99909 188 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 ZNF2Q9BSG1 426 aaPredicted RBP11.9□□□□□ -0.5
COL9A3-209ENST00000469852 MRPL20Q9BYC9 149 aaKnown RBP11.9□□□□□ -0.5
COL9A3-209ENST00000469852 FXYD6Q9H0Q3 95 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 TNFRSF19Q9NS68 423 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 SDHAF2Q9NX18 166 aa11.9□□□□□ -0.5
COL9A3-209ENST00000469852 ATRQ13535 2644 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 IGHV3-72A0A0B4J1Y9 119 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 IGHV1-3A0A0C4DH29 117 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 DNAJC9-AS1A6NH13 148 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 H3BUX3 64 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 TIMM23O14925 209 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 RAB29O14966 203 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 VENTXO95231 258 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 RAB3DO95716 219 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF735P0CB33 412 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 IL3RAP26951 378 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 GPR12P47775 334 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 LUMP51884 338 aaPredicted RBP11.89□□□□□ -0.51
COL9A3-209ENST00000469852 FXYD4P59646 89 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 HILS1P60008 231 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 BAMBIQ13145 260 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 SCGB2A2Q13296 93 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 KLF9Q13886 244 aaPredicted RBP11.89□□□□□ -0.51
COL9A3-209ENST00000469852 LRRC75BQ2VPJ9 315 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 ACTBL2Q562R1 376 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 RNASE10Q5GAN6 216 aaKnown RBP11.89□□□□□ -0.51
COL9A3-209ENST00000469852 DRAM1Q8N682 238 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 OR56B4Q8NH76 319 aa11.89□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF107Q9UII5 783 aaPredicted RBP11.89□□□□□ -0.51
COL9A3-209ENST00000469852 RBM7Q9Y580 266 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms