RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SLC35E3Q7Z769 313 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 ZNF329Q86UD4 541 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 FOXRED2Q8IWF2 684 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 COMMD1Q8N668 190 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 C8orf31Q8N9H6 132 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 OR52L2PQ8NGH6 319 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 ARL11Q969Q4 196 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 MRPS24Q96EL2 167 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 MCRIP2Q9BUT9 160 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 SPACA1Q9HBV2 294 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 RAB9BQ9NP90 201 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 CKLFQ9UBR5 152 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 DIMT1Q9UNQ2 313 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 EXOSC1Q9Y3B2 195 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 COL7A1Q02388 2944 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 TRAV39A0A0B4J263 110 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 TRBV5-5A0A0J9YX44 114 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 A0A1W2PPE3 182 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 C15orf65H3BRN8 121 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 SDCBPO00560 298 aaPredicted RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 LALBAP00709 142 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 MT-ND4P03905 459 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 IGFBP3P17936 291 aaPredicted RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 CD1BP29016 333 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 MYCNOSP40205 109 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 HNF4GQ14541 408 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 TMEM30BQ3MIR4 351 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 ODF3L2Q3SX64 289 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 SLC22A6Q4U2R8 563 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 ATAD3CQ5T2N8 411 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 TTC23Q5W5X9 447 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 TEX38Q6PEX7 206 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 ZNF497Q6ZNH5 498 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 OR2W3Q7Z3T1 314 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 MOB3BQ86TA1 216 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 TGIF2LXQ8IUE1 241 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 CDH26Q8IXH8 852 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 STPG2Q8N412 459 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 STX19Q8N4C7 294 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 Q8N6K4 173 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 OR2T10Q8NGZ9 312 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 NEK7Q8TDX7 302 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 GHSRQ92847 366 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 ST6GALNAC6Q969X2 333 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 TMEM80Q96HE8 168 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 NOL4LQ96MY1 436 aaPredicted RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 ZNF184Q99676 751 aaPredicted RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 ELOVL1Q9BW60 279 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 GON7Q9BXV9 100 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 ABCG5Q9H222 651 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 LIN7CQ9NUP9 197 aaKnown RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 CHCHD3Q9NX63 227 aaKnown RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 ZNF581Q9P0T4 197 aa5.69□□□□□ -1.5
USP54-208ENST00000461520 RCC2Q9P258 522 aaKnown RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 ZMAT5Q9UDW3 170 aaKnown RBP5.69□□□□□ -1.5
USP54-208ENST00000461520 A0A1W2PP11 408 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 FAM90A7PA6NKC0 464 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 NCBP2LA6PVI3 153 aaKnown RBP5.68□□□□□ -1.5
USP54-208ENST00000461520 FAM90A23PA8MXZ1 464 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 MCRIP1C9JLW8 97 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 AIPO00170 330 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 SPINT2O43291 252 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 TXNL1O43396 289 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 CA11O75493 328 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 BAG2O95816 211 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 MOSP00540 346 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 REG1BP48304 166 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 ZNF137PP52743 207 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 TAS2R43P59537 309 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 RPS11P62280 158 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP54-208ENST00000461520 DCTN2Q13561 401 aaKnown RBP5.68□□□□□ -1.5
USP54-208ENST00000461520 PNLIPRP3Q17RR3 467 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 DEFB121Q5J5C9 76 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 C6orf183Q5T699 404 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 DMKNQ6E0U4 476 aaPredicted RBP5.68□□□□□ -1.5
USP54-208ENST00000461520 TRAT1Q6PIZ9 186 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 SLC25A48Q6ZT89 311 aaKnown RBP5.68□□□□□ -1.5
USP54-208ENST00000461520 ZNF695Q8IW36 515 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 GAPTQ8N292 157 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 Q8N9W7 124 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 ZNF485Q8NCK3 441 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 TMEM104Q8NE00 496 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 SETD9Q8NE22 299 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 KLHL30-AS1Q8NEE0 82 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 OR8H1Q8NGG4 311 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 OR13C5Q8NGS8 318 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 CCDC107Q8WV48 283 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 RTN4IP1Q8WWV3 396 aaPredicted RBP5.68□□□□□ -1.5
USP54-208ENST00000461520 ORAI1Q96D31 301 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 PGLYRP3Q96LB9 341 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 P2RX4Q99571 388 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 RASL11BQ9BPW5 248 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 AAMDCQ9H7C9 122 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 C8orf4Q9NR00 106 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 CLEC2DQ9UHP7 191 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 LINC00527Q9UJ94 153 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 KIAA2026Q5HYC2 2103 aa5.68□□□□□ -1.5
USP54-208ENST00000461520 TRAV8-7A0A075B6U6 113 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 TRBV5-7A0A0A0MS05 114 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 IGHV3-43A0A0B4J1X8 118 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms