RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 GLIPR1P48060 266 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 CCL20P78556 96 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 ZNF474Q6S9Z5 364 aaPredicted RBP12.61□□□□□ -0.39
LDLR-202ENST00000455727 CD177Q8N6Q3 437 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 C15orf54Q8N8G6 183 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 OR2Z1Q8NG97 314 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 FAM216AQ8WUB2 273 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 RBMXL1Q96E39 390 aaKnown RBP12.61□□□□□ -0.39
LDLR-202ENST00000455727 C5orf30Q96GV9 206 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 WASF3Q9UPY6 502 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 SVILO95425 2214 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 COLCA2A8K830 154 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 CRYABP02511 175 aaKnown RBP12.6□□□□□ -0.39
LDLR-202ENST00000455727 ADH4P08319 380 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 IAPPP10997 89 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 RAB2AP61019 212 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 UBE2KP61086 200 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 RPL30P62888 115 aaKnown RBP12.6□□□□□ -0.39
LDLR-202ENST00000455727 HOXA4Q00056 320 aaPredicted RBP12.6□□□□□ -0.39
LDLR-202ENST00000455727 C1orf185Q5T7R7 199 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 ZNF66Q6ZN08 573 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 THNSL2Q86YJ6 484 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 ZNF525Q8N782 197 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 SCGB1C1Q8TD33 95 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 PSMG3Q9BT73 122 aaPredicted RBP12.6□□□□□ -0.39
LDLR-202ENST00000455727 HSPB7Q9UBY9 170 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 KLF2Q9Y5W3 355 aaPredicted RBP12.6□□□□□ -0.39
LDLR-202ENST00000455727 USF3Q68DE3 2245 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 MEX3AA1L020 520 aaKnown RBP12.6□□□□□ -0.39
LDLR-202ENST00000455727 SPINT2O43291 252 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 ZNF737O75373 536 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 GLRXP35754 106 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 TNFRSF9Q07011 255 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 CR1LQ2VPA4 569 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 AWAT1Q58HT5 328 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 SLC25A24Q6NUK1 477 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 OR13A1Q8NGR1 328 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 S100PBPQ96BU1 408 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 EGLN1Q9GZT9 426 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 UNKLQ9H9P5 680 aaKnown RBP12.6□□□□□ -0.39
LDLR-202ENST00000455727 LAMP3Q9UQV4 416 aa12.6□□□□□ -0.39
LDLR-202ENST00000455727 DMXL1Q9Y485 3027 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 C7orf77A4D0Y5 90 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 C15orf65H3BRN8 121 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 PPIHO43447 177 aaKnown RBP12.59□□□□□ -0.39
LDLR-202ENST00000455727 RAMP3O60896 148 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 METTL15P1P0C7V9 234 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 GZMHP20718 246 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 ZNF83P51522 516 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 MSMPQ1L6U9 139 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 RXFP4Q8TDU9 374 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 HSD17B10Q99714 261 aaKnown RBP12.59□□□□□ -0.39
LDLR-202ENST00000455727 RARRES2Q99969 163 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 RPS10P5Q9NQ39 176 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 CRYAAP02489 173 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 FOLR2P14207 255 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 BRWD1-AS2P59051 145 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 NKX6-1P78426 367 aaPredicted RBP12.59□□□□□ -0.39
LDLR-202ENST00000455727 SERF2P84101 59 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 ARL16Q0P5N6 197 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 RHEBQ15382 184 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 LRRC75BQ2VPJ9 315 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 SOHLH1Q5JUK2 328 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 AVPI1Q5T686 147 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 HAPLN4Q86UW8 402 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 PPP1R35Q8TAP8 253 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 MUCL1Q96DR8 90 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.59□□□□□ -0.39
LDLR-202ENST00000455727 DUSP13Q9UII6 198 aa12.59□□□□□ -0.39
LDLR-202ENST00000455727 ZNF292O60281 2723 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 CFAP47Q6ZTR5 3102 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 A0A1B0GV50 99 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 LRRC30A6NM36 301 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 CLDN14O95500 239 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 CLDN1O95832 211 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 TFF1P04155 84 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 SSTR5P35346 364 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 KRTCAP3Q53RY4 240 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 TMEM14EPQ6UXP3 125 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 LRP11Q86VZ4 500 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 ZNF808Q8N4W9 903 aaPredicted RBP12.58□□□□□ -0.4
LDLR-202ENST00000455727 RBMXL3Q8N7X1 1067 aaKnown RBP12.58□□□□□ -0.4
LDLR-202ENST00000455727 SFT2D1Q8WV19 159 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 SNX22Q96L94 193 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 AGMATQ9BSE5 352 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 SFXN3Q9BWM7 321 aa12.58□□□□□ -0.4
LDLR-202ENST00000455727 DSPP15924 2871 aaKnown RBP12.58□□□□□ -0.4
LDLR-202ENST00000455727 IGKV1D-17A0A075B6S4 117 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 M0R1B8 84 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 KRASP01116 189 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 HSPB1P04792 205 aaKnown RBP12.57□□□□□ -0.4
LDLR-202ENST00000455727 CRYBA1P05813 215 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 EGR1P18146 543 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 ZNF506Q5JVG8 444 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 FAM53AQ6NSI3 398 aaPredicted RBP12.57□□□□□ -0.4
LDLR-202ENST00000455727 ETV3LQ6ZN32 361 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 TCTEX1D2Q8WW35 142 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 EDARADDQ8WWZ3 215 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 RBKSQ9H477 322 aa12.57□□□□□ -0.4
LDLR-202ENST00000455727 IGLV3-9A0A075B6K5 115 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms