RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 RNF157Q96PX1 679 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CCDC32Q9BV29 185 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF436Q9C0F3 470 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TMPRSS5Q9H3S3 457 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CXorf21Q9HAI6 301 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PLSCR3Q9NRY6 295 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TAS2R1Q9NYW7 299 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CRB1P82279 1406 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 KNCNA6PVL3 124 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 C8orf87E5RJ46 101 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 LGALS9O00182 355 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CHST10O43529 356 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 EIF1BO60739 113 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZFAND5O76080 213 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 HLA-DQB2P05538 268 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 C1GALT1C1LP0DN25 315 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ESDP10768 282 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PLA2G2AP14555 144 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 EIF1P41567 113 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 RAP1AP62834 184 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FABP5Q01469 135 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM267Q0VDI3 215 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 KCNJ8Q15842 424 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM182AQ5T1J6 154 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM205Q6UW68 189 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 GOLT1AQ6ZVE7 132 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF575Q86XF7 245 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 OR4X1Q8NH49 305 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 OR52P1PQ8NH57 321 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 RHOXF1Q8NHV9 184 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CT55Q8WUE5 264 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 RNF185Q96GF1 192 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 HDHD3Q9BSH5 251 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 MED29Q9NX70 200 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 LINC00527Q9UJ94 153 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PROCRQ9UNN8 238 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PCYT1BQ9Y5K3 369 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF706Q9Y5V0 76 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 F11RQ9Y624 299 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TNRC6CQ9HCJ0 1690 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SAMD9Q5K651 1589 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 ABCC1P33527 1531 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 MTORP42345 2549 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 CLUHO75153 1309 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV6-1A0A0B4J1U7 121 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM236DA0A1B0GTK5 79 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 H7C1C5 153 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 AIPO00170 330 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 FAAHO00519 579 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SOCS3O14543 225 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 BANF1O75531 89 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SCO1O75880 301 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 APOA2P02652 100 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 TTRP02766 147 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM236CP0DP71 79 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 LCN6P62502 163 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 GNA12Q03113 381 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SPCS2Q15005 226 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM241Q24JQ0 296 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 MESTQ5EB52 335 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 LCN8Q6JVE9 175 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 LPCAT3Q6P1A2 487 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 CRIP3Q6Q6R5 217 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 C5orf46Q6UWT4 87 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SLC25A45Q8N413 288 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 OR2T4Q8NH00 348 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 OR8S1Q8NH09 359 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 KCNS1Q96KK3 526 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 LINC00477Q96M19 166 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PRSS27Q9BQR3 290 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 EFCAB11Q9BUY7 163 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 C19orf24Q9BVV8 132 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 GNB4Q9HAV0 340 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 RBM12B-AS1Q9P1G2 102 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 KLF13Q9Y2Y9 288 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 TTC28Q96AY4 2481 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 CPDO75976 1380 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 hCG_1818297A0A087WSY0 165 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV3-74A0A0B4J1X5 117 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 hADV38S2A0JD32 116 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 A8MT66 165 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 F5H5P2 479 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PIRO00625 290 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 MRASO14807 208 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 MMP23AO75900 390 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PDYNP01213 254 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 MDH2P40926 338 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 HSPE1P61604 102 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 ELOCQ15369 112 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF239Q16600 458 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 MPV17L2Q567V2 206 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF550Q7Z398 422 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 C2orf15Q8WU43 125 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 OLFM3Q96PB7 478 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PAXXQ9BUH6 204 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 PRTFDC1Q9NRG1 225 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 UBQLN4Q9NRR5 601 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 LYRM2Q9NU23 88 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 SIGLEC1Q9BZZ2 1709 aa1.76□□□□□ -2.13
CCDC88A-208ENST00000444458 CACNA1IQ9P0X4 2223 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms