RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 LYG1Q8N1E2 194 aa12.81□□□□□ -0.36
USP40-206ENST00000443711 ARRDC1Q8N5I2 433 aa12.81□□□□□ -0.36
USP40-206ENST00000443711 OR4C16Q8NGL9 310 aa12.81□□□□□ -0.36
USP40-206ENST00000443711 OR8U1Q8NH10 309 aa12.81□□□□□ -0.36
USP40-206ENST00000443711 MALSU1Q96EH3 234 aa12.81□□□□□ -0.36
USP40-206ENST00000443711 ZNF2Q9BSG1 426 aaPredicted RBP12.81□□□□□ -0.36
USP40-206ENST00000443711 INAFM1C9JVW0 142 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 RAB29O14966 203 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 PPYP01298 95 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 AMY2AP04746 511 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 SCGB2A2Q13296 93 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 ZNF660Q6AZW8 331 aaPredicted RBP12.8□□□□□ -0.36
USP40-206ENST00000443711 LHFPL4Q7Z7J7 247 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 OR4D10Q8NGI6 311 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 SLC6A7Q99884 636 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 AGMATQ9BSE5 352 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 PIPOXQ9P0Z9 390 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 ZNF221Q9UK13 617 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 RNF150Q9ULK6 438 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 FAM96BQ9Y3D0 163 aa12.8□□□□□ -0.36
USP40-206ENST00000443711 LY6LH3BQJ8 138 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 SLC22A5O76082 557 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 ZNF735P0CB33 412 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 SRD5A1P18405 259 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 GPR12P47775 334 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 TPTE2P1Q5T6R2 138 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 OR56B4Q8NH76 319 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 RPEQ96AT9 228 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 ABHD14BQ96IU4 210 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 S1PR3Q99500 378 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 IFI27L2Q9H2X8 130 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 HRASLSQ9HDD0 168 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 ABCB10Q9NRK6 738 aa12.79□□□□□ -0.36
USP40-206ENST00000443711 A0A0U1RQK1 487 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 CENPXA8MT69 81 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 OOSP1A8MZH6 123 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 UPK1BO75841 260 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 GAPDHP04406 335 aaKnown RBP12.78□□□□□ -0.36
USP40-206ENST00000443711 FBP1P09467 338 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 ZNF137PP52743 207 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 FXYD4P59646 89 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 SCGB2B2Q4G0G5 96 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 LDLRAD2Q5SZI1 272 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 FAAP20Q6NZ36 180 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 ODF3L1Q8IXM7 274 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 BCL6BQ8N143 479 aaPredicted RBP12.78□□□□□ -0.36
USP40-206ENST00000443711 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.78□□□□□ -0.36
USP40-206ENST00000443711 TERB2Q8NHR7 220 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 C17orf50Q8WW18 174 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 TOMM40LQ969M1 308 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 ST6GALNAC6Q969X2 333 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 MOB3AQ96BX8 217 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 AJUBAQ96IF1 538 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 PRRT1Q99946 306 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 C7orf50Q9BRJ6 194 aaKnown RBP12.78□□□□□ -0.36
USP40-206ENST00000443711 SLC5A7Q9GZV3 580 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 OR2D2Q9H210 308 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 MCUBQ9NWR8 336 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 SCP2D1Q9UJQ7 156 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 GAB2Q9UQC2 676 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 HILPDAQ9Y5L2 63 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 MTORP42345 2549 aa12.78□□□□□ -0.36
USP40-206ENST00000443711 NSD1Q96L73 2696 aaPredicted RBP12.77□□□□□ -0.36
USP40-206ENST00000443711 SAA2-SAA4A0A096LPE2 208 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 IGKV1D-13A0A0B4J2D9 117 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 LINC00854A0A1B0GVQ3 168 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 NAP1L6A6NFF2 107 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 HSD17B6O14756 317 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 SAA2P0DJI9 122 aaPredicted RBP12.77□□□□□ -0.37
USP40-206ENST00000443711 IGKV1-13P0DP09 117 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 SSX2Q16385 188 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 CCDC144NLQ6NUI1 221 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 FAM71F2Q6NXP2 309 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 LPCAT3Q6P1A2 487 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 OR51S1Q8NGJ8 323 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 SECTM1Q8WVN6 248 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 C22orf15Q8WYQ4 148 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 MEGF9Q9H1U4 602 aa12.77□□□□□ -0.37
USP40-206ENST00000443711 SOX21Q9Y651 276 aaPredicted RBP12.77□□□□□ -0.37
USP40-206ENST00000443711 OR5H14A6NHG9 310 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 TXNL1O43396 289 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 CRLF1O75462 422 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 ARHGDIBP52566 201 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 UCP3P55916 312 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 ZNF816Q0VGE8 651 aaPredicted RBP12.76□□□□□ -0.37
USP40-206ENST00000443711 MSMO1Q15800 293 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 DEFB112Q30KQ8 113 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 PLA1AQ53H76 456 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 RPL39P5Q59GN2 51 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 ZNF833PQ6ZTB9 187 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 LHFPL1Q86WI0 220 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 LDLRAD3Q86YD5 345 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 TGIF2LXQ8IUE1 241 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 ZNF645Q8N7E2 425 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 RTN4IP1Q8WWV3 396 aaPredicted RBP12.76□□□□□ -0.37
USP40-206ENST00000443711 BORCS5Q969J3 196 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 CCL28Q9NRJ3 127 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 SLC2A8Q9NY64 477 aa12.76□□□□□ -0.37
USP40-206ENST00000443711 PLA2G10O15496 165 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 ECI1P42126 302 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms