RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 PNLIPRP3Q17RR3 467 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 UBE2NLQ5JXB2 153 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 CLVS1Q8IUQ0 354 aaPredicted RBP14.89□□□□□ -0.03
SHH-204ENST00000441114 OR10J5Q8NHC4 309 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 EDARADDQ8WWZ3 215 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 S100A16Q96FQ6 103 aaKnown RBP14.89□□□□□ -0.03
SHH-204ENST00000441114 EAF1Q96JC9 268 aaPredicted RBP14.89□□□□□ -0.03
SHH-204ENST00000441114 MRPL20Q9BYC9 149 aaKnown RBP14.89□□□□□ -0.03
SHH-204ENST00000441114 DCSTAMPQ9H295 470 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 RDH8Q9NYR8 311 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 COMMD3Q9UBI1 195 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 MOB4Q9Y3A3 225 aa14.89□□□□□ -0.03
SHH-204ENST00000441114 SSX5O60225 188 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 PEX14O75381 377 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 PTHLHP12272 177 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 DTYMKP23919 212 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 CD1BP29016 333 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 RORCP51449 518 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 PITPNAQ00169 270 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 TMEM95Q3KNT9 176 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 RPL39P5Q59GN2 51 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 OR2T10Q8NGZ9 312 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 GINS4Q9BRT9 223 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 PIPOXQ9P0Z9 390 aa14.88□□□□□ -0.03
SHH-204ENST00000441114 A0A0A6YYH2 397 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 A6NJ64 397 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 NCBP2LA6PVI3 153 aaKnown RBP14.87□□□□□ -0.03
SHH-204ENST00000441114 RAB29O14966 203 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 FCER2P06734 321 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 VDAC2P45880 294 aaPredicted RBP14.87□□□□□ -0.03
SHH-204ENST00000441114 LSAMPQ13449 338 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 ZNF833PQ6ZTB9 187 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 Q8N2B8 174 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 KLHDC1Q8N7A1 406 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 KCTD12Q96CX2 325 aaKnown RBP14.87□□□□□ -0.03
SHH-204ENST00000441114 S1PR3Q99500 378 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 NABP2Q9BQ15 211 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 CABLES2Q9BTV7 478 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 ABCG5Q9H222 651 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 SERTAD4Q9NUC0 356 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 ZNF221Q9UK13 617 aa14.87□□□□□ -0.03
SHH-204ENST00000441114 TRBV6-7A0A0A0MS04 114 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 ITGB1BP1O14713 200 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 MOSP00540 346 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 AMY1AP04745 511 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 AMY2AP04746 511 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 EBI3Q14213 229 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 SRSF7Q16629 238 aaKnown RBP eCLIP14.86□□□□□ -0.03
SHH-204ENST00000441114 HIST2H2BDQ6DRA6 164 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 C11orf44Q8N8P7 122 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 AUNIPQ9H7T9 357 aa14.86□□□□□ -0.03
SHH-204ENST00000441114 RBM7Q9Y580 266 aaKnown RBP14.86□□□□□ -0.03
SHH-204ENST00000441114 MEIS3P1A6NDR6 274 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 J3QRK9 145 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 M0QZK8 103 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 XRCC3O43542 346 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 EIF4EP06730 217 aaKnown RBP14.85□□□□□ -0.03
SHH-204ENST00000441114 OR8U9P0C7N5 309 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 RPL5P46777 297 aaKnown RBP14.85□□□□□ -0.03
SHH-204ENST00000441114 GPR12P47775 334 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 TMEM69Q5SWH9 247 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 C11orf88Q6PI97 169 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 GLDNQ6ZMI3 551 aaPredicted RBP14.85□□□□□ -0.03
SHH-204ENST00000441114 Q6ZS49 121 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 GVQW1Q8N7I0 195 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 C5orf56Q8N8D9 126 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 OR8U1Q8NH10 309 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 CITED1Q99966 193 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 ZNF251Q9BRH9 671 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 AGMATQ9BSE5 352 aa14.85□□□□□ -0.03
SHH-204ENST00000441114 HPGDSO60760 199 aa14.84□□□□□ -0.03
SHH-204ENST00000441114 SPCS2Q15005 226 aa14.84□□□□□ -0.03
SHH-204ENST00000441114 Q8N6K4 173 aa14.84□□□□□ -0.03
SHH-204ENST00000441114 ACOT12Q8WYK0 555 aa14.84□□□□□ -0.03
SHH-204ENST00000441114 SCOCQ9UIL1 159 aa14.84□□□□□ -0.03
SHH-204ENST00000441114 CT45A6P0DMU7 189 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 CT45A5P0DMU8 189 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 CT45A7P0DMV0 189 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 ZNF182P17025 639 aaPredicted RBP14.83□□□□□ -0.04
SHH-204ENST00000441114 F2RL1P55085 397 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 TAS2R20P59543 309 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 FAM71F2Q6NXP2 309 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 MZT2AQ6P582 158 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 DRAXINQ8NBI3 349 aaPredicted RBP14.83□□□□□ -0.04
SHH-204ENST00000441114 TOLLIPQ9H0E2 274 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 OR2D2Q9H210 308 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 GHITMQ9H3K2 345 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 ANXA10Q9UJ72 324 aa14.83□□□□□ -0.04
SHH-204ENST00000441114 MRPS7Q9Y2R9 242 aaKnown RBP14.83□□□□□ -0.04
SHH-204ENST00000441114 FAM25AB3EWG3 89 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 FAM25CB3EWG5 89 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 FAM25GB3EWG6 89 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 FGF16O43320 207 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 NOL3O60936 208 aaKnown RBP14.82□□□□□ -0.04
SHH-204ENST00000441114 ELK1P19419 428 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 NFYAP23511 347 aaPredicted RBP14.82□□□□□ -0.04
SHH-204ENST00000441114 LINC00205P59089 165 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 ARPC4P59998 168 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 CNIH2Q6PI25 160 aa14.82□□□□□ -0.04
SHH-204ENST00000441114 FAM131AQ6UXB0 335 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms