RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 LOC105371242A0A075B767 164 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 LRP5LA4QPB2 252 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 HMGB3O15347 200 aaKnown RBP9.13□□□□□ -0.95
TCOF1-204ENST00000427724 CST7O76096 145 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 FBP1P09467 338 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 CEACAM6P40199 344 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 PCP4P48539 62 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 SUB1P53999 127 aaKnown RBP eCLIP9.13□□□□□ -0.95
TCOF1-204ENST00000427724 CTAG1AP78358 180 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 SRPXP78539 464 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 OR5A2Q8NGI9 324 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 CRIM1Q9NZV1 1036 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 METRNQ9UJH8 293 aa9.13□□□□□ -0.95
TCOF1-204ENST00000427724 A0A1W2PPE3 182 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 FSTP19883 344 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 PRDX2P32119 198 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 GAMTQ14353 236 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 ZNF124Q15973 351 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 S100A7AQ86SG5 101 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 TGIF2LYQ8IUE0 185 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 TGIF2LXQ8IUE1 241 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 NEU4Q8WWR8 484 aaPredicted RBP9.12□□□□□ -0.95
TCOF1-204ENST00000427724 TMEM18Q96B42 140 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 RPUSD4Q96CM3 377 aaKnown RBP9.12□□□□□ -0.95
TCOF1-204ENST00000427724 KLHDC3Q9BQ90 382 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 WDR13Q9H1Z4 485 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 METTL1Q9UBP6 276 aaKnown RBP9.12□□□□□ -0.95
TCOF1-204ENST00000427724 WIPI2Q9Y4P8 454 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 ZNF320A2RRD8 509 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 ST8SIA5O15466 376 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 ERVS71-1P61550 626 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 RPRMLQ8N4K4 120 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 MAPK1IP1LQ8NDC0 245 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 OR8G5Q8NG78 346 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 TXN2Q99757 166 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 RTN4RQ9BZR6 473 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 IL36GQ9NZH8 169 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 TRAV14DV4A0A0A6YYC5 116 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 PPIAL4CA0A0B4J2A2 164 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 OPN1MWP04001 364 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 PPIAL4GP0DN37 164 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 OPN1MW2P0DN77 364 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 OPN1MW3P0DN78 364 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 ZNF816Q0VGE8 651 aaPredicted RBP9.12□□□□□ -0.95
TCOF1-204ENST00000427724 LRRC75AQ8NAA5 344 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 MOB3AQ96BX8 217 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 HDHD3Q9BSH5 251 aaPredicted RBP9.12□□□□□ -0.95
TCOF1-204ENST00000427724 NMES1Q9C002 83 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 CBLN4Q9NTU7 201 aa9.12□□□□□ -0.95
TCOF1-204ENST00000427724 HELZP42694 1942 aaKnown RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 OR5AC1P0C628 307 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 KLK2P20151 261 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 ELLP55199 621 aaPredicted RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 MRPS11P82912 194 aaKnown RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 AESQ08117 197 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 HABP2Q14520 560 aaPredicted RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 FADS6Q8N9I5 356 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 NEIL1Q96FI4 390 aaPredicted RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 PECRQ9BY49 303 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 LPAR5Q9H1C0 372 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 ZNF107Q9UII5 783 aaPredicted RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 GOSR1O95249 250 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 MT-CO2P00403 227 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 IFI6P09912 130 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 DHODHQ02127 395 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 UBE2V2Q15819 145 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 C1orf100Q5SVJ3 147 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 FAM201AQ5SY85 155 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 ZNF837Q96EG3 531 aaPredicted RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 RPH3ALQ9UNE2 315 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 RCL1Q9Y2P8 373 aaKnown RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 CBY3A6NI87 242 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 TRGC2P03986 189 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 CELA3BP08861 270 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 KITLGP21583 273 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 ERVFRD-1P60508 538 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 ERHP84090 104 aaKnown RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 PMS2P11Q13670 270 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 MRPL24Q96A35 216 aaKnown RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 G6PC2Q9NQR9 355 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 SLC39A9Q9NUM3 307 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 CARHSP1Q9Y2V2 147 aaKnown RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 IGHV3-72A0A0B4J1Y9 119 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 RNF222A6NCQ9 220 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 FCGR3BO75015 233 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 ONECUT2O95948 504 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 KRASP01116 189 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 MMDQ15546 238 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 TEX30Q5JUR7 227 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 SPANXN5Q5MJ07 72 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 SLC25A47Q6Q0C1 308 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 BSCL2Q96G97 398 aaPredicted RBP9.11□□□□□ -0.95
TCOF1-204ENST00000427724 HSF4Q9ULV5 492 aa9.11□□□□□ -0.95
TCOF1-204ENST00000427724 USP9YO00507 2555 aaPredicted RBP9.1□□□□□ -0.95
TCOF1-204ENST00000427724 IGKV3-7A0A075B6H7 116 aa9.1□□□□□ -0.95
TCOF1-204ENST00000427724 IGKV1D-43A0A0B4J1Z2 117 aa9.1□□□□□ -0.95
TCOF1-204ENST00000427724 S100A7P31151 101 aa9.1□□□□□ -0.95
TCOF1-204ENST00000427724 PLAURQ03405 335 aa9.1□□□□□ -0.95
TCOF1-204ENST00000427724 KCNIP4Q6PIL6 250 aa9.1□□□□□ -0.95
TCOF1-204ENST00000427724 DYRK2Q92630 601 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms