RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 COQ8AQ8NI60 647 aa14.07□□□□□ -0.16
CCDC28B-202ENST00000421922 TMEM230Q96A57 120 aa14.07□□□□□ -0.16
CCDC28B-202ENST00000421922 DMRTB1Q96MA1 342 aa14.07□□□□□ -0.16
CCDC28B-202ENST00000421922 TACC2O95359 2948 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 KIAA1324LA8MWY0 1029 aaPredicted RBP14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 TOR1AO14656 332 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 TNFSF12O43508 249 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 MMP23AO75900 390 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 SFT2D2O95562 160 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 RRAS2P62070 204 aaPredicted RBP14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 CATR1Q13166 79 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 MSMO1Q15800 293 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 TBC1D26Q86UD7 250 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 DRAM1Q8N682 238 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 KIR3DL3Q8N743 410 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 BVESQ8NE79 360 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 ABHD14BQ96IU4 210 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 TMEM133Q9H2Q1 129 aa14.06□□□□□ -0.16
CCDC28B-202ENST00000421922 FBN2P35556 2912 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 POLQO75417 2590 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 IGHV2-70DA0A0C4DH43 119 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 MPPED1O15442 326 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 DUS4LO95620 317 aaKnown RBP14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 ZFP36P26651 326 aaKnown RBP14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 ARF6P62330 175 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 DHODHQ02127 395 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 LYG1Q8N1E2 194 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 OR10X1Q8NGY0 326 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 LPAR2Q9HBW0 351 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 LIN7CQ9NUP9 197 aaKnown RBP14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 PIPOXQ9P0Z9 390 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 CSMD1Q96PZ7 3565 aa14.05□□□□□ -0.16
CCDC28B-202ENST00000421922 A0A1W2PPE3 182 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 HMX3A6NHT5 357 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 RAB29O14966 203 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 TRAPPC2P0DI81 140 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 TRAPPC2BP0DI82 140 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 ZNF16P17020 682 aaPredicted RBP14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 IL3RAP26951 378 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 PRRX1P54821 245 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 AKAP14Q86UN6 197 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 OR13D1Q8NGV5 346 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 OR51H1Q8NH63 302 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 OR9G1Q8NH87 305 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 S1PR3Q99500 378 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 CLEC7AQ9BXN2 247 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 METTL8Q9H825 291 aaKnown RBP14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 KPTNQ9Y664 436 aa14.04□□□□□ -0.16
CCDC28B-202ENST00000421922 C3orf85A0A1B0GTC6 90 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 SLC31A2O15432 143 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 PGLYRP1O75594 196 aaPredicted RBP14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 B3GALNT1O75752 331 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 SRPXP78539 464 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 CT45A1Q5HYN5 189 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 LIN54Q6MZP7 749 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 SLC25A48Q6ZT89 311 aaKnown RBP14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 KCTD9Q7L273 389 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 LDLRAD3Q86YD5 345 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 ABHD12Q8N2K0 398 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 ZNF439Q8NDP4 499 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 CT45A3Q8NHU0 189 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 MITD1Q8WV92 249 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 IFI27L2Q9H2X8 130 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 HEXA-AS1Q9H8Q6 139 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 SDHAF2Q9NX18 166 aa14.03□□□□□ -0.16
CCDC28B-202ENST00000421922 A0A087X0M5 115 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 PIGBOS1A0A0B4J2F0 54 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 A0A1B0GX30 115 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 FAM157AC9JC47 383 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 M0R1X1 148 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 OR5AC1P0C628 307 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 COX7A1P24310 79 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 SUPT4H1P63272 117 aaKnown RBP14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 PRSS57Q6UWY2 283 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 C8orf31Q8N9H6 132 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 TCTEX1D2Q8WW35 142 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 TNFRSF14Q92956 283 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 GALNT14Q96FL9 552 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 HSD17B10Q99714 261 aaKnown RBP14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 MGAT4CQ9UBM8 478 aa14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 AMMECR1Q9Y4X0 333 aaPredicted RBP14.02□□□□□ -0.16
CCDC28B-202ENST00000421922 ARHGAP32A7KAX9 2087 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 IGHV2-26A0A0B4J1V2 119 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 H0Y980 276 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 J3QR06 171 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 GOSR2O14653 212 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 CCNKO75909 580 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 F2RP25116 425 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 ZNF134P52741 427 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 DVL1P1P54792 670 aaPredicted RBP14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 FCN2Q15485 313 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 ZNF66Q6ZN08 573 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 C1orf122Q6ZSJ8 110 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 LGI3Q8N145 548 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 AGMATQ9BSE5 352 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 SIRT7Q9NRC8 400 aa14.01□□□□□ -0.17
CCDC28B-202ENST00000421922 SAA2-SAA4A0A096LPE2 208 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 A0A0B4J2A0 478 aa14□□□□□ -0.17
CCDC28B-202ENST00000421922 B4DSR2 109 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms