RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 K7N7A8 449 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 SIRPB1O00241 398 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 NUPL2O15504 423 aaKnown RBP12.44□□□□□ -0.42
USP4-203ENST00000415188 SSSCA1O60232 199 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 OR8U9P0C7N5 309 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 ARHGDIBP52566 201 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 FBXL19-AS1Q494R0 122 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 SMUG1Q53HV7 270 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 SPNS3Q6ZMD2 512 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 GCNT2Q8N0V5 402 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 OR8U1Q8NH10 309 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 KLF14Q8TD94 323 aaPredicted RBP12.44□□□□□ -0.42
USP4-203ENST00000415188 PBDC1Q9BVG4 233 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 PLSCR4Q9NRQ2 329 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 KCNIP1Q9NZI2 227 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 TRAPPC2LQ9UL33 140 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 AKAP6Q13023 2319 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 DFFBO76075 338 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 HAND1O96004 215 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 PRH1P02810 166 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 CTRB1P17538 263 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 CD80P33681 288 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 RPL23AP62750 156 aaKnown RBP12.43□□□□□ -0.42
USP4-203ENST00000415188 FLI1Q01543 452 aaPredicted RBP12.43□□□□□ -0.42
USP4-203ENST00000415188 FOXF2Q12947 444 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 P2RY6Q15077 328 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 MIDNQ504T8 468 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 CXorf66Q5JRM2 361 aaPredicted RBP12.43□□□□□ -0.42
USP4-203ENST00000415188 CTRB2Q6GPI1 263 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 SLC35E4Q6ICL7 350 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 DPPA3Q6W0C5 159 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 CNEP1R1Q8N9A8 125 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 TOLLIPQ9H0E2 274 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 ARID1AO14497 2285 aa12.43□□□□□ -0.42
USP4-203ENST00000415188 A0A1W2PR80 420 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 CDIPTO14735 213 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 IGLV1-44P01699 117 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 ERVS71-1P61550 626 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 ZNF616Q08AN1 781 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 GUK1Q16774 197 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 CLEC9AQ6UXN8 241 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 C5orf24Q7Z6I8 188 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 STX12Q86Y82 276 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 HSD17B11Q8NBQ5 300 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 IL1F10Q8WWZ1 152 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 GPR146Q96CH1 333 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 AIFM2Q9BRQ8 373 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 OR1A1Q9P1Q5 309 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 RNF115Q9Y4L5 304 aa12.42□□□□□ -0.42
USP4-203ENST00000415188 MED13LQ71F56 2210 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 A0A1B0GWJ7 208 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 PSG2P11465 335 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 PAX6P26367 422 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 MPV17P39210 176 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 ZNF718Q3SXZ3 478 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 MBNL2Q5VZF2 373 aaKnown RBP12.41□□□□□ -0.42
USP4-203ENST00000415188 RNASE11Q8TAA1 199 aaKnown RBP12.41□□□□□ -0.42
USP4-203ENST00000415188 LINC01560Q8TB33 94 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 FAM222BQ8WU58 562 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 ATP5SQ99766 215 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 JKAMPQ9P055 326 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 PROCRQ9UNN8 238 aa12.41□□□□□ -0.42
USP4-203ENST00000415188 OOEPA6NGQ2 149 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 A6NNC1 897 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 FAM90A26D6RGX4 464 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 H7C2Y5 167 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 IFNL4K9M1U5 179 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 TNFSF12O43508 249 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 CHST1O43916 411 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 GRPP07492 148 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 ATP6V0CP27449 155 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 NPBWR1P48145 328 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 TAS2R30P59541 319 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 HFEQ30201 348 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 ALKBH6Q3KRA9 238 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 VWA1Q6PCB0 445 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 TRAT1Q6PIZ9 186 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 TCTEX1D1Q8N7M0 179 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 OR5C1Q8NGR4 320 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 OR2G3Q8NGZ4 309 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 OR51H1Q8NH63 302 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 FAM216AQ8WUB2 273 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 SCRT1Q9BWW7 348 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 MAGT1Q9H0U3 335 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 SH3BGRL3Q9H299 93 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 HIPK2Q9H2X6 1198 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 SEBOXQ9HB31 216 aaPredicted RBP12.4□□□□□ -0.42
USP4-203ENST00000415188 RBM7Q9Y580 266 aaKnown RBP12.4□□□□□ -0.42
USP4-203ENST00000415188 WSB1Q9Y6I7 421 aa12.4□□□□□ -0.42
USP4-203ENST00000415188 HRNRQ86YZ3 2850 aaPredicted RBP12.4□□□□□ -0.42
USP4-203ENST00000415188 AGPAT2O15120 278 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 MLNRO43193 412 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 TIMM8AO60220 97 aaPredicted RBP12.4□□□□□ -0.43
USP4-203ENST00000415188 IGLV2-14P01704 120 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 CECR9P0C854 216 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 GCH1P30793 250 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 SULT1A1P50225 295 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 DYNLT3P51808 116 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 PAX5Q02548 391 aa12.4□□□□□ -0.43
USP4-203ENST00000415188 CLINT1Q14677 625 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms