RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SCGB2A2Q13296 93 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 KRTCAP3Q53RY4 240 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 MTCH1Q9NZJ7 389 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 IGHV3-72A0A0B4J1Y9 119 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 TRAV38-1A0A0B4J264 116 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 C20orf202A1L168 122 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 MPTX1A8MV57 137 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 TOX4O94842 621 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 OR4A8P0C604 315 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 SMIM6P0DI80 62 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 MPV17P39210 176 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 NPBWR1P48145 328 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 KRTDAPP60985 99 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 C5orf24Q7Z6I8 188 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 PTPN13Q12923 2485 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 SNRPCP09234 159 aaKnown RBP9.56□□□□□ -0.88
PTPRF-204ENST00000412568 GZMHP20718 246 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 RUNX1Q01196 453 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 ABLIM2Q6H8Q1 611 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 POM121Q96HA1 1249 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 SLC35E1Q96K37 410 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 RAB40CQ96S21 281 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 DCTN5Q9BTE1 182 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 SLC25A22Q9H936 323 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 KCNMB2Q9Y691 235 aa9.56□□□□□ -0.88
PTPRF-204ENST00000412568 SSTR5P35346 364 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 ERHP84090 104 aaKnown RBP9.55□□□□□ -0.88
PTPRF-204ENST00000412568 EWSR1Q01844 656 aaKnown RBP eCLIP9.55□□□□□ -0.88
PTPRF-204ENST00000412568 RTP5Q14D33 572 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 RNFT1Q5M7Z0 435 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 TOMM20LQ6UXN7 152 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 ETV3LQ6ZN32 361 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 SEC11CQ9BY50 192 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 UBTD1Q9HAC8 227 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 RAB5AP20339 215 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 P2RY1P47900 373 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 VAMP3Q15836 100 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 KCNMB1Q16558 191 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 FAM209BQ5JX69 171 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 OR5D13Q8NGL4 314 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 BCL2L2Q92843 193 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-204ENST00000412568 RPEQ96AT9 228 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 R3HDM4Q96D70 268 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 REPIN1Q9BWE0 567 aaKnown RBP9.55□□□□□ -0.88
PTPRF-204ENST00000412568 LINC00470Q9BZP3 86 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 ZNF586Q9NXT0 402 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 MYO18BQ8IUG5 2567 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 PROB1E7EW31 1015 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 C21orf62-AS1Q17RA5 79 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 ACSF3Q4G176 576 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-204ENST00000412568 OR4A4PQ8NGN8 299 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 WBP1Q96G27 269 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 CIB3Q96Q77 187 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-204ENST00000412568 TPPP3Q9BW30 176 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 ZNF331Q9NQX6 463 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-204ENST00000412568 SLC35D1Q9NTN3 355 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 NPTNQ9Y639 398 aa9.55□□□□□ -0.88
PTPRF-204ENST00000412568 MSGN1A6NI15 193 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 CBY3A6NI87 242 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 CDS2O95674 445 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 MBPP02686 304 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-204ENST00000412568 F2RP25116 425 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 SULT1A1P50225 295 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 SIGLECL1Q8N7X8 197 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 NABP1Q96AH0 204 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 MEGF10Q96KG7 1140 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 POM121L2Q96KW2 1035 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 ACTR3CQ9C0K3 210 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-204ENST00000412568 CTDSP1Q9GZU7 261 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 CLN8Q9UBY8 286 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 RAXQ9Y2V3 346 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 CBY1Q9Y3M2 126 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 GFRA1P56159 465 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 NAAAQ02083 359 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 WDFY1Q8IWB7 410 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 LINC00518Q8N0U6 118 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 TMEM45BQ96B21 275 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 MS4A5Q9H3V2 200 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 FOXD3Q9UJU5 478 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-204ENST00000412568 MFSD2BA6NFX1 497 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 COX5AP20674 150 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 OR52M1Q8NGK5 317 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 OR5P3Q8WZ94 311 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 SNX22Q96L94 193 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 TLNRD1Q9H1K6 362 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 GNB4Q9HAV0 340 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 CISD1Q9NZ45 108 aaKnown RBP9.54□□□□□ -0.88
PTPRF-204ENST00000412568 ZNF581Q9P0T4 197 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 DOK5Q9P104 306 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 HSF4Q9ULV5 492 aa9.54□□□□□ -0.88
PTPRF-204ENST00000412568 IGKV1D-8A0A087WSZ0 117 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 TRAV34A0A0B4J273 112 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SEC14L6B5MCN3 397 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SMPD2O60906 423 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 BTNL8Q6UX41 500 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 NRIP2Q9BQI9 281 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 ZNF665Q9H7R5 613 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 SPTBN4Q9H254 2564 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 TRAV14DV4A0A0A6YYC5 116 aa9.53□□□□□ -0.88
PTPRF-204ENST00000412568 CRYM-AS1A6NIL9 109 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms