RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 IGHV3OR16-10A0A075B7F0 116 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 CYSRT1A8MQ03 144 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 SLC22A5O76082 557 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 NDUFB6O95139 128 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 PTTG1O95997 202 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 TCRBP04435 133 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 RLN1P04808 185 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 CD99P14209 185 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 IL3RAP26951 378 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 UBE2E1P51965 193 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 UCP3P55916 312 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 ABCA11PQ4W5N1 156 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 GPR157Q5UAW9 335 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 BEND2Q8NDZ0 799 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 CREB3L1Q96BA8 519 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 AGMATQ9BSE5 352 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 IFI27L2Q9H2X8 130 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 YAE1D1Q9NRH1 226 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 COPZ2Q9P299 210 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 C14orf166Q9Y224 244 aaKnown RBP14.71□□□□□ -0.05
SDC1-203ENST00000403076 AMMECR1Q9Y4X0 333 aaPredicted RBP14.71□□□□□ -0.05
SDC1-203ENST00000403076 CSPG4Q6UVK1 2322 aa14.71□□□□□ -0.05
SDC1-203ENST00000403076 TRAV40A0A0B4J280 105 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 CENPVL3A0A0U1RRI6 287 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 AVPP01185 164 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 SURF2Q15527 256 aaPredicted RBP14.71□□□□□ -0.06
SDC1-203ENST00000403076 HLA-DRB5Q30154 266 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 PLA1AQ53H76 456 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 ZNF626Q68DY1 528 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 LDLRAD3Q86YD5 345 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 SLC38A6Q8IZM9 456 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 ZNF645Q8N7E2 425 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 MRGPRFQ96AM1 343 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 GHITMQ9H3K2 345 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 OCEL1Q9H607 264 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 PIPOXQ9P0Z9 390 aa14.71□□□□□ -0.06
SDC1-203ENST00000403076 VPS13CQ709C8 3753 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 RAB29O14966 203 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 IGLV1-47P01700 117 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 PI3P19957 117 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 S100GP29377 79 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 PLET1Q6UQ28 207 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 ZNF818PQ6ZRF7 136 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 ZDHHC22Q8N966 263 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 S1PR3Q99500 378 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 GPR132Q9UNW8 380 aa14.7□□□□□ -0.06
SDC1-203ENST00000403076 TRAV6A0A075B6T7 132 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 ODF3BA8MYP8 253 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 BUB1B-PAK6H3BSN5 160 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 GPR31O00270 319 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 HTR1DP28221 377 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 GNRHRP30968 328 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 TRIM16LQ309B1 348 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 PHLDA2Q53GA4 152 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 TMED4Q7Z7H5 227 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 CMTM1Q8IZ96 169 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 DRAM1Q8N682 238 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 DUSP18Q8NEJ0 188 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 OR4P4Q8NGL7 312 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 RSRP1Q9BUV0 290 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 NUDT15Q9NV35 164 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 FLVCR2Q9UPI3 526 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 VSIG4Q9Y279 399 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 NUBP2Q9Y5Y2 271 aa14.69□□□□□ -0.06
SDC1-203ENST00000403076 ACANP16112 2415 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 SAA2-SAA4A0A096LPE2 208 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 IGHV1-69DA0A0B4J2H0 117 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 LEUTXA8MZ59 168 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 ARPC1BO15143 372 aaKnown RBP14.68□□□□□ -0.06
SDC1-203ENST00000403076 IGHV1-69P01742 117 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 CTSDP07339 412 aaPredicted RBP14.68□□□□□ -0.06
SDC1-203ENST00000403076 H2AFB2P0C5Z0 115 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 SAA2P0DJI9 122 aaPredicted RBP14.68□□□□□ -0.06
SDC1-203ENST00000403076 CEACAM3P40198 252 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 KRTAP1-1Q07627 177 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 RPL39P5Q59GN2 51 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.68□□□□□ -0.06
SDC1-203ENST00000403076 AKR1E2Q96JD6 320 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 TMUB1Q9BVT8 246 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 C20orf85Q9H1P6 137 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 SDHAF2Q9NX18 166 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 DPM3Q9P2X0 92 aa14.68□□□□□ -0.06
SDC1-203ENST00000403076 A8MV72 311 aaPredicted RBP14.67□□□□□ -0.06
SDC1-203ENST00000403076 M0R1X1 148 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 NPFFO15130 113 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 IGHV4-38-2P0DP08 117 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 SPNP16150 400 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 CCBE1Q6UXH8 406 aaPredicted RBP14.67□□□□□ -0.06
SDC1-203ENST00000403076 C1orf229Q6ZS94 237 aaPredicted RBP14.67□□□□□ -0.06
SDC1-203ENST00000403076 ODF3L1Q8IXM7 274 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 CENPSQ8N2Z9 138 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 ZBTB34Q8NCN2 500 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 NANPQ8TBE9 248 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 RPEQ96AT9 228 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 ZNF486Q96H40 463 aaPredicted RBP14.67□□□□□ -0.06
SDC1-203ENST00000403076 C5orf66Q9H5L9 145 aa14.67□□□□□ -0.06
SDC1-203ENST00000403076 TNFSF12O43508 249 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 FOSL1P15407 271 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 AKR1C4P17516 323 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 PIGPP57054 158 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms