RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 NEURL1O76050 574 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 IGKV1-13P0DP09 117 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 BCL2P10415 239 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 FABP4P15090 132 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 SERF2P84101 59 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 TMEM105Q8N8V8 129 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 KLF14Q8TD94 323 aaPredicted RBP15.82■□□□□ 0.12
USP48-204ENST00000400301 HSD17B10Q99714 261 aaKnown RBP15.82■□□□□ 0.12
USP48-204ENST00000400301 ACACAQ13085 2346 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 HRASP01112 189 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 OPN1MWP04001 364 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 FABP1P07148 127 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 OPN1MW2P0DN77 364 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 OPN1MW3P0DN78 364 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 CHRNA7P36544 502 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 POM121L2Q96KW2 1035 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 OR4C12Q96R67 309 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 ZNF883P0CG24 379 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 IGHV3OR15-7A0A075B7D8 119 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 PRDX2P32119 198 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 GALR1P47211 349 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 RAB7AP51149 207 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 Q0VFX4 171 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 NAT8Q9UHE5 227 aa15.81■□□□□ 0.12
USP48-204ENST00000400301 DPPA3Q6W0C5 159 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 ADH4P08319 380 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 ERVS71-1P61550 626 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 ERHP84090 104 aaKnown RBP15.8■□□□□ 0.12
USP48-204ENST00000400301 LY86O95711 162 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 TNFRSF1AP19438 455 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 HIST1H2BAQ96A08 127 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 C18orf12Q96KH6 178 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 LY6G6EA0A0G2JKS1 128 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 B4DEV8 164 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 PROB1E7EW31 1015 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 HSPB1P04792 205 aaKnown RBP15.8■□□□□ 0.12
USP48-204ENST00000400301 IL3RAP26951 378 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 HIST1H3AP68431 136 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 MRPS11P82912 194 aaKnown RBP15.8■□□□□ 0.12
USP48-204ENST00000400301 LINC00518Q8N0U6 118 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 DRAM1Q8N682 238 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 LRFN3Q9BTN0 628 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 SIRT7Q9NRC8 400 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 U3KQA8 63 aa15.8■□□□□ 0.12
USP48-204ENST00000400301 TAS2R45P59539 299 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 TIGITQ495A1 244 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 OR8G5Q8NG78 346 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 OR4S2Q8NH73 311 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 WIPF3A6NGB9 483 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 FBP1P09467 338 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 CD82P27701 267 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 SUB1P53999 127 aaKnown RBP eCLIP15.79■□□□□ 0.122e-6■■■■□ 20.7
USP48-204ENST00000400301 HGFACQ04756 655 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 BSCL2Q96G97 398 aaPredicted RBP15.79■□□□□ 0.12
USP48-204ENST00000400301 OPN3Q9H1Y3 402 aaPredicted RBP15.79■□□□□ 0.12
USP48-204ENST00000400301 WIPI2Q9Y4P8 454 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 CTXND1A0A1B0GTU2 59 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 PAGE4O60829 102 aa15.79■□□□□ 0.12
USP48-204ENST00000400301 B3GALT5-AS1P59052 145 aa15.78■□□□□ 0.12
USP48-204ENST00000400301 MRPL30Q8TCC3 161 aaKnown RBP15.78■□□□□ 0.12
USP48-204ENST00000400301 ACY3Q96HD9 319 aa15.78■□□□□ 0.12
USP48-204ENST00000400301 THBS3P49746 956 aa15.78■□□□□ 0.12
USP48-204ENST00000400301 TAF15Q92804 592 aaKnown RBP eCLIP15.78■□□□□ 0.12
USP48-204ENST00000400301 RBKSQ9H477 322 aa15.78■□□□□ 0.12
USP48-204ENST00000400301 MMP7P09237 267 aaPredicted RBP15.78■□□□□ 0.12
USP48-204ENST00000400301 SMIM6P0DI80 62 aa15.78■□□□□ 0.12
USP48-204ENST00000400301 SLC35E3Q7Z769 313 aa15.78■□□□□ 0.12
USP48-204ENST00000400301 BCL2L2Q92843 193 aaPredicted RBP15.78■□□□□ 0.12
USP48-204ENST00000400301 C11orf94C9JXX5 98 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 WNT9BO14905 357 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 SSX2Q16385 188 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 FOXL2NBQ6ZUU3 175 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 ZNF645Q8N7E2 425 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 TMEM56Q96MV1 263 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 TMEM56-RWDD3S4R434 201 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 MYO7BQ6PIF6 2116 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 TRAV20A0A0B4J274 112 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 OR5G3P0C626 314 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 SSMEM1Q8WWF3 244 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 LSM10Q969L4 123 aaKnown RBP15.77■□□□□ 0.12
USP48-204ENST00000400301 RPRMQ9NS64 109 aa15.77■□□□□ 0.12
USP48-204ENST00000400301 NBASA2RRP1 2371 aa15.77■□□□□ 0.11
USP48-204ENST00000400301 A0A1W2PPE3 182 aa15.77■□□□□ 0.11
USP48-204ENST00000400301 PRR33A8MZF0 331 aa15.77■□□□□ 0.11
USP48-204ENST00000400301 PHOX2AO14813 284 aa15.77■□□□□ 0.11
USP48-204ENST00000400301 MANBALQ9NQG1 85 aa15.77■□□□□ 0.11
USP48-204ENST00000400301 GFRA1P56159 465 aa15.77■□□□□ 0.11
USP48-204ENST00000400301 DAZAP1Q96EP5 407 aaKnown RBP15.77■□□□□ 0.11
USP48-204ENST00000400301 PCDH15Q96QU1 1955 aa15.77■□□□□ 0.11
USP48-204ENST00000400301 FTH1P19P0C7X4 201 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 ZNF251Q9BRH9 671 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 IGKV3D-15A0A087WSY6 115 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 CELA3BP08861 270 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 GLIPR1P48060 266 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 GFRALQ6UXV0 394 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 C5orf24Q7Z6I8 188 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 WFDC1Q9HC57 220 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 POLEQ07864 2286 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 FER1L5A0AVI2 2057 aa15.76■□□□□ 0.11
USP48-204ENST00000400301 SHANK1Q9Y566 2161 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms