RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 HIKESHIQ53FT3 197 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 VN1R4Q7Z5H5 301 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 MMD2Q8IY49 270 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 NPDC1Q9NQX5 325 aaPredicted RBP10.3□□□□□ -0.76
SYNPO-202ENST00000394243 GZMHP20718 246 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 TNFRSF9Q07011 255 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 LRRC75BQ2VPJ9 315 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 ZAR1Q86SH2 424 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 RGPD1P0DJD0 1748 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 A0A1W2PP11 408 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 HYPMO75409 117 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 PSG6Q00889 435 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 COL10A1Q03692 680 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 LIMS2Q7Z4I7 341 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 NDUFAF3Q9BU61 184 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 LOXL2Q9Y4K0 774 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 RICTORQ6R327 1708 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 RP1L1Q8IWN7 2480 aaPredicted RBP10.3□□□□□ -0.76
SYNPO-202ENST00000394243 IGHV5-51A0A0C4DH38 117 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 LILRA5A6NI73 299 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 MPDU1O75352 247 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 GCM2O75603 506 aaPredicted RBP10.3□□□□□ -0.76
SYNPO-202ENST00000394243 EML2O95834 649 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 PLAUP00749 431 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 CD1AP06126 327 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 WNT16Q9UBV4 365 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 TINAGQ9UJW2 476 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 PGPA6NDG6 321 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 SRSF5Q13243 272 aaKnown RBP10.29□□□□□ -0.76
SYNPO-202ENST00000394243 CRYBB3P26998 211 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 RBM11P57052 281 aaKnown RBP10.29□□□□□ -0.76
SYNPO-202ENST00000394243 GCSAMLQ5JQS6 135 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 LAMTOR1Q6IAA8 161 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 RELQ04864 619 aaPredicted RBP10.29□□□□□ -0.76
SYNPO-202ENST00000394243 NUP37Q8NFH4 326 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 KCNS1Q96KK3 526 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 KLK15Q9H2R5 256 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 C5orf66Q9H5L9 145 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 OR8G5Q8NG78 346 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 OR4D5Q8NGN0 318 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 OR5R1Q8NH85 324 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 JKAMPQ9P055 326 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 PPIHO43447 177 aaKnown RBP10.29□□□□□ -0.76
SYNPO-202ENST00000394243 TYMSP04818 313 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 SPSB2Q99619 263 aa10.29□□□□□ -0.76
SYNPO-202ENST00000394243 MAP1BP46821 2468 aaKnown RBP10.29□□□□□ -0.76
SYNPO-202ENST00000394243 CEACAM18A8MTB9 384 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 TM4SF20Q53R12 229 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 GPHA2Q96T91 129 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 GDF9O60383 454 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 SCTP09683 121 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 FGF5P12034 268 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 EGR1P18146 543 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 CEACAM3P40198 252 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 GFRA1P56159 465 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 ZP1P60852 638 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 RPS11P62280 158 aaKnown RBP eCLIP10.28□□□□□ -0.76
SYNPO-202ENST00000394243 SDHCQ99643 169 aaPredicted RBP10.28□□□□□ -0.76
SYNPO-202ENST00000394243 ISG15P05161 165 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 FUT5Q11128 374 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 DEFB109BQ30KR1 87 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 SLC25A40Q8TBP6 338 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 SPSB4Q96A44 273 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 TMEM160Q9NX00 188 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 TRAV8-6A0A0B4J262 113 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 LINC00869P0C866 280 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 FBXO46Q6PJ61 603 aaPredicted RBP10.28□□□□□ -0.76
SYNPO-202ENST00000394243 LINC00596Q86U02 117 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 AQP3Q92482 292 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 IMMP2LQ96T52 175 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 LAMTOR2Q9Y2Q5 125 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 ANKRD31Q8N7Z5 1873 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 A0A1W2PPE3 182 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 HRKO00198 91 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 BGLAPP02818 100 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 GPR3P46089 330 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 RTP5Q14D33 572 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 FBLN7Q53RD9 439 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 TMEM196Q5HYL7 178 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 SELENOHQ8IZQ5 122 aaKnown RBP10.28□□□□□ -0.76
SYNPO-202ENST00000394243 OR4C13Q8NGP0 309 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 TRPM6Q9BX84 2022 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 CD200R1LQ6Q8B3 271 aa10.28□□□□□ -0.76
SYNPO-202ENST00000394243 SRSF12Q8WXF0 261 aaKnown RBP10.28□□□□□ -0.76
SYNPO-202ENST00000394243 ZNF430Q9H8G1 570 aaPredicted RBP10.28□□□□□ -0.76
SYNPO-202ENST00000394243 RND1Q92730 232 aa10.27□□□□□ -0.76
SYNPO-202ENST00000394243 GPR146Q96CH1 333 aa10.27□□□□□ -0.76
SYNPO-202ENST00000394243 ABHD14BQ96IU4 210 aa10.27□□□□□ -0.76
SYNPO-202ENST00000394243 SPTY2D1-AS1A0A0U1RR47 76 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 C19orf67A6NJJ6 358 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 LDLRAD2Q5SZI1 272 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 SSBP3Q9BWW4 388 aaPredicted RBP10.27□□□□□ -0.77
SYNPO-202ENST00000394243 OR2H1Q9GZK4 316 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 LMO7DNF2Z398 122 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 IGHV4-34P06331 123 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF764Q96H86 408 aaPredicted RBP10.27□□□□□ -0.77
SYNPO-202ENST00000394243 SGK494Q96LW2 274 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF488Q96MN9 340 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 FNDC4Q9H6D8 234 aaPredicted RBP10.27□□□□□ -0.77
SYNPO-202ENST00000394243 J3QT63 122 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms