RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 WFDC12Q8WWY7 111 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 KCTD12Q96CX2 325 aaKnown RBP10.67□□□□□ -0.7
VPS28-202ENST00000377348 S100A16Q96FQ6 103 aaKnown RBP10.67□□□□□ -0.7
VPS28-202ENST00000377348 MRPL20Q9BYC9 149 aaKnown RBP10.67□□□□□ -0.7
VPS28-202ENST00000377348 C11orf54Q9H0W9 315 aaPredicted RBP10.67□□□□□ -0.7
VPS28-202ENST00000377348 RANBP3Q9H6Z4 567 aaPredicted RBP10.67□□□□□ -0.7
VPS28-202ENST00000377348 AUNIPQ9H7T9 357 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 RDH8Q9NYR8 311 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 RNF150Q9ULK6 438 aa10.67□□□□□ -0.7
VPS28-202ENST00000377348 A0A0A6YYH2 397 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 A6NJ64 397 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 AMY1AP04745 511 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 AMY2AP04746 511 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 FCER2P06734 321 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 PITPNAQ00169 270 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 TMEM95Q3KNT9 176 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 ABCA11PQ4W5N1 156 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 Q6ZS49 121 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 ZNF833PQ6ZTB9 187 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 C16orf82Q7Z2V1 217 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 GVQW1Q8N7I0 195 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 OR2T6Q8NHC8 308 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 EDARADDQ8WWZ3 215 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 EAF1Q96JC9 268 aaPredicted RBP10.66□□□□□ -0.7
VPS28-202ENST00000377348 ZNF251Q9BRH9 671 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 AGMATQ9BSE5 352 aa10.66□□□□□ -0.7
VPS28-202ENST00000377348 TRBV6-7A0A0A0MS04 114 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 MEIS3P1A6NDR6 274 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 ITGB1BP1O14713 200 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 TXNL1O43396 289 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 XRCC3O43542 346 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 HPGDSO60760 199 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 LPLP06858 475 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 ELK1P19419 428 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 CD1BP29016 333 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 TAS2R20P59543 309 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 LSAMPQ13449 338 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 EBI3Q14213 229 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 SRSF7Q16629 238 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS28-202ENST00000377348 TMEM69Q5SWH9 247 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 HIST2H2BDQ6DRA6 164 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 Q8N2B8 174 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 OR10J5Q8NHC4 309 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 AKR1E2Q96JD6 320 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 NABP2Q9BQ15 211 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 GINS4Q9BRT9 223 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 PRSS22Q9GZN4 317 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 TOLLIPQ9H0E2 274 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 PIPOXQ9P0Z9 390 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 SCOCQ9UIL1 159 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 MOB4Q9Y3A3 225 aa10.65□□□□□ -0.7
VPS28-202ENST00000377348 RAB29O14966 203 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 PROP1O75360 226 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 OR8U9P0C7N5 309 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 ZNF182P17025 639 aaPredicted RBP10.64□□□□□ -0.71
VPS28-202ENST00000377348 TMBIM6P55061 237 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 LINC00205P59089 165 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 ARSJQ5FYB0 599 aaPredicted RBP10.64□□□□□ -0.71
VPS28-202ENST00000377348 C9orf152Q5JTZ5 239 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 SHISA2Q6UWI4 295 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 GLDNQ6ZMI3 551 aaPredicted RBP10.64□□□□□ -0.71
VPS28-202ENST00000377348 Q8N6K4 173 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 OR2T10Q8NGZ9 312 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 OR8U1Q8NH10 309 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 RAB2BQ8WUD1 216 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 ACOT12Q8WYK0 555 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 SERTAD4Q9NUC0 356 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 ANXA10Q9UJ72 324 aa10.64□□□□□ -0.71
VPS28-202ENST00000377348 J3QRK9 145 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 MOSP00540 346 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 APOA1P02647 267 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 CT45A6P0DMU7 189 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 CT45A5P0DMU8 189 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 CT45A7P0DMV0 189 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 H1FOOQ8IZA3 346 aaPredicted RBP10.63□□□□□ -0.71
VPS28-202ENST00000377348 KLHDC1Q8N7A1 406 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 C5orf56Q8N8D9 126 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 DRAXINQ8NBI3 349 aaPredicted RBP10.63□□□□□ -0.71
VPS28-202ENST00000377348 BEST4Q8NFU0 473 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 ISOC1Q96CN7 298 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 C5orf30Q96GV9 206 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 RITA1Q96K30 269 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 S1PR3Q99500 378 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 OR2D2Q9H210 308 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 ZNF221Q9UK13 617 aa10.63□□□□□ -0.71
VPS28-202ENST00000377348 MRPS7Q9Y2R9 242 aaKnown RBP10.63□□□□□ -0.71
VPS28-202ENST00000377348 NCBP2LA6PVI3 153 aaKnown RBP10.62□□□□□ -0.71
VPS28-202ENST00000377348 H3BMQ9 156 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 DIRAS3O95661 229 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 HLA-DQB1P01920 261 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 VSIG10L2P0DP72 767 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 NFYAP23511 347 aaPredicted RBP10.62□□□□□ -0.71
VPS28-202ENST00000377348 VDAC2P45880 294 aaPredicted RBP10.62□□□□□ -0.71
VPS28-202ENST00000377348 GPR12P47775 334 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 F2RL1P55085 397 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 FAM71F2Q6NXP2 309 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 MZT2AQ6P582 158 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 CNIH2Q6PI25 160 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 C11orf88Q6PI97 169 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 FAM131AQ6UXB0 335 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms