RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 TMEM106BQ9NUM4 274 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF586Q9NXT0 402 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 GALPQ9UBC7 116 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 HSPB8Q9UJY1 196 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 IGHV2-26A0A0B4J1V2 119 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TSPAN11A1L157 253 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 LRRC30A6NM36 301 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 F5H5K5 113 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 H7BYZ3 331 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PHF1O43189 567 aaPredicted RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF354AO60765 605 aaPredicted RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 RAMP2O60895 175 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ARL6IP5O75915 188 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PGA4P0DJD7 388 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PGA5P0DJD9 388 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 CXCL8P10145 99 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 CELP19835 753 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 SIRPAP78324 504 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 GINS1Q14691 196 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TP53I3Q53FA7 332 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 SYT14P1Q58G82 188 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 LCE2DQ5TA82 110 aaPredicted RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 AADACL3Q5VUY0 350 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF343Q6P1L6 599 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 NR2C2APQ86WQ0 139 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 MBD3L2Q8NHZ7 208 aaPredicted RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PPP1R1CQ8WVI7 109 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 GRAMD2BQ96HH9 432 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 DUX3Q96PT4 197 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 SPATA25Q9BR10 227 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF649Q9BS31 505 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 SMIM3Q9BZL3 60 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 MTFP1Q9UDX5 166 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 KLHDC2Q9Y2U9 406 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 WSB1Q9Y6I7 421 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ABCA7Q8IZY2 2146 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 IGF2RP11717 2491 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 CDH23Q9H251 3354 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 IGLC7A0M8Q6 106 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 SLC31A1O15431 190 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 GPANK1O95872 356 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 HBZP02008 142 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 DANCRP0C864 163 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 AKAIN1P0CW23 69 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ALOX5APP20292 161 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 CFPP27918 469 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 DRD3P35462 400 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TFPI2P48307 235 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 HNRNPA3P51991 378 aaKnown RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 RPL11P62913 178 aaKnown RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PLCXD2Q0VAA5 305 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 FOXF1Q12946 379 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ENDOGQ14249 297 aaKnown RBP4.3□□□□□ -1.72
UBE3D-202ENST00000369746 CLEC12AQ5QGZ9 265 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 GTF2H5Q6ZYL4 71 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 DOK3Q7L591 496 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 LINC01561Q8N1V8 128 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 GPD1LQ8N335 351 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 IL22RA1Q8N6P7 574 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TCTEX1D1Q8N7M0 179 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 ZFP41Q8N8Y5 198 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 FNDC9Q8TBE3 224 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PLPPR1Q8TBJ4 325 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TMEM158Q8WZ71 300 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 PSMF1Q92530 271 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 LINC00477Q96M19 166 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TRIB3Q96RU7 358 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 DPY30Q9C005 99 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TXNIPQ9H3M7 391 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 TAF9BQ9HBM6 251 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 HS3ST2Q9Y278 367 aa4.3□□□□□ -1.72
UBE3D-202ENST00000369746 A0A087WX48 190 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TRAV38-1A0A0B4J264 116 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 A0A1W2PS29 197 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MAP1LC3B2A6NCE7 125 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 H3BQ15 152 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 J3QR89 54 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 GAPDHSO14556 408 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 PRKNO60260 465 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 OR1I1O60431 355 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 CGAP01215 116 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 CSN3P07498 182 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MMP7P09237 267 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 GCSHP23434 173 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 CD34P28906 385 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 RPL12P30050 165 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 APOBEC1P41238 236 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 CLDN15P56746 228 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 OR12D2P58182 307 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 S100A10P60903 97 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 RPL8P62917 257 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ROM1Q03395 351 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 EXOSC7Q15024 291 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 PAFAH1B3Q15102 231 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 BATFQ16520 125 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TMEM215Q68D42 235 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TMEM200BQ69YZ2 307 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MRPL54Q6P161 138 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 Q6ZRG5 221 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms