RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 PPP1R3EQ9H7J1 279 aa6.4□□□□□ -1.38
SYNE1-208ENST00000367256 RCC2Q9P258 522 aaKnown RBP6.4□□□□□ -1.38
SYNE1-208ENST00000367256 RBFOX2O43251 390 aaKnown RBP eCLIP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 DNAL4O96015 105 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 PPYP01298 95 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 TRA2AQ13595 282 aaKnown RBP eCLIP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 CIRBPQ14011 172 aaKnown RBP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 OR4D9Q8NGE8 314 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 MRPL30Q8TCC3 161 aaKnown RBP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 ALG14Q96F25 216 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 HSPB9Q9BQS6 159 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 SF3B5Q9BWJ5 86 aaKnown RBP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 IL36RNQ9UBH0 155 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 LOC285556D6RIA3 1793 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 A0A1B0GTH9 108 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 TMIGD3P0DMS9 266 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 PIGYQ3MUY2 71 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 STAG3L3P0CL85 134 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 MPLP40238 635 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 HINT1P49773 126 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 NUBP1P53384 320 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 SSPNQ14714 243 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 HOGA1Q86XE5 327 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 LINC00518Q8N0U6 118 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 OR4C13Q8NGP0 309 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 LSM10Q969L4 123 aaKnown RBP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 FAM181BA6NEQ2 426 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 EBLN2Q6P2I7 272 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 RTN4RL1Q86UN2 441 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-208ENST00000367256 OR8G5Q8NG78 346 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 DIRC2Q96SL1 478 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 CHST5Q9GZS9 411 aa6.4□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF735P0CB33 412 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 ERVFRD-1P60508 538 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 PRICKLE4Q2TBC4 344 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 GCSAMLQ5JQS6 135 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 ACER2Q5QJU3 275 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 HSPB7Q9UBY9 170 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 EML5Q05BV3 1969 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 IGHV3-21A0A0B4J1V1 117 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 OR1L8Q8NGR8 309 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 SGMS2Q8NHU3 365 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 IL19Q9UHD0 177 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 MED13Q9UHV7 2174 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 SLC35B1P78383 322 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 PLAURQ03405 335 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 THSD4Q6ZMP0 1018 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 A8MWL6 223 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 C2CD4DB7Z1M9 353 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF205O95201 554 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 IFI6P09912 130 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 CCDC144NLQ6NUI1 221 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 ZFP64Q9NPA5 681 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 SLC52A3Q9NQ40 469 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 PHLDA3Q9Y5J5 127 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 SPINK2P20155 84 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM78Q5T7P6 136 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 SPINK14Q6IE38 97 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 WFDC3Q8IUB2 231 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 DDA1Q9BW61 102 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 MRPL16Q9NX20 251 aaKnown RBP6.39□□□□□ -1.39
SYNE1-208ENST00000367256 TUBD1Q9UJT1 453 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 COL18A1P39060 1754 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 METTL12A8MUP2 240 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 K7N7A8 449 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 HYPMO75409 117 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 RCC1P18754 421 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-208ENST00000367256 PGFP49763 221 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 MMDQ15546 238 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF385CQ66K41 422 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-208ENST00000367256 TIMP4Q99727 224 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 SLC25A10Q9UBX3 287 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-208ENST00000367256 CLN8Q9UBY8 286 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 KIAA1549Q9HCM3 1950 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 PPM1DO15297 605 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 CKS2P33552 79 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 RNFT1Q5M7Z0 435 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 MPZL1O95297 269 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 CDX1P47902 265 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-208ENST00000367256 ANKRD33Q7Z3H0 272 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 OR1P1Q8NH06 330 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 TRBV23-1A0A0A0MS06 115 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 NPIPB6E9PJ23 425 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 LEMD1Q68G75 181 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 C16orf92Q96LL3 132 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM70Q9BUB7 260 aa6.39□□□□□ -1.39
SYNE1-208ENST00000367256 PLCE1Q9P212 2302 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 PPP1R17O96001 155 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 BEND2Q8NDZ0 799 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 AQP10Q96PS8 301 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 GREB1Q4ZG55 1949 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 LY75O60449 1722 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 CDC42EP2O14613 210 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 SRD5A2P31213 254 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 MRPL24Q96A35 216 aaKnown RBP6.38□□□□□ -1.39
SYNE1-208ENST00000367256 BEX4Q9NWD9 120 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-208ENST00000367256 OR5AC2Q9NZP5 309 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 FRRS1LQ9P0K9 344 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 HES3Q5TGS1 186 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM30AQ9NV96 361 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms