RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 WNT9BO14905 357 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 EGR1P18146 543 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 OR3A1P47881 315 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 TRA2AQ13595 282 aaKnown RBP eCLIP10.27□□□□□ -0.77
CLIP3-201ENST00000360535 ZNF585BQ52M93 769 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 DRAM1Q8N682 238 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 OR4F5Q8NH21 305 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 OR1L1Q8NH94 360 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 OR4F4Q96R69 305 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 OR2D2Q9H210 308 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 FOXJ2Q9P0K8 574 aa10.27□□□□□ -0.77
CLIP3-201ENST00000360535 A0A1W2PPQ1 181 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 ATP1A1-AS1Q5TC04 95 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 SCCPDHQ8NBX0 429 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 OR52L2PQ8NGH6 319 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 ZDHHC16Q969W1 377 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 DUXBA0A1W2PPF3 345 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 SEC14L6B5MCN3 397 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 GATCO43716 136 aaKnown RBP10.26□□□□□ -0.77
CLIP3-201ENST00000360535 LYZL6O75951 148 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 IGKV1D-33P01593 117 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 IGKV1-33P01594 117 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 IL2RGP31785 369 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 ARR3P36575 388 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 WFIKKN1Q96NZ8 548 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 RIMS4Q9H426 269 aaPredicted RBP10.26□□□□□ -0.77
CLIP3-201ENST00000360535 GVINP1Q7Z2Y8 2422 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 IGHEP01854 428 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 AESQ08117 197 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 NCR3LG1Q68D85 454 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 TMPRSS7Q7RTY8 843 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 C16orf82Q7Z2V1 217 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 CA5BP1Q8WTZ4 195 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 SDSLQ96GA7 329 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 OBP2BQ9NPH6 170 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 TMEM9BQ9NQ34 198 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 GFOD1Q9NXC2 390 aa10.26□□□□□ -0.77
CLIP3-201ENST00000360535 A0A087WWC5 75 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 OR5H1A6NKK0 313 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 ZNF705GA8MUZ8 300 aaPredicted RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 PHOX2AO14813 284 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 IGLV2-14P01704 120 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 UBE2G2P60604 165 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 USF2Q15853 346 aaPredicted RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 SAXO1Q8IYX7 474 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 HIST3H2BBQ8N257 126 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 RPP25LQ8N5L8 163 aaKnown RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 Q8NFD4 153 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 TMEM37Q8WXS4 190 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 TMEM45BQ96B21 275 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 IER2Q9BTL4 223 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 ELOVL1Q9BW60 279 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 SIRT7Q9NRC8 400 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 CFAP47Q6ZTR5 3102 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 SMCO3A2RU48 225 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 GALR2O43603 387 aaPredicted RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 CYB5R3P00387 301 aaPredicted RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 CEACAM1P13688 526 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 GABRA2P47869 451 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 OR8G1Q15617 311 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 FIP1L1Q6UN15 594 aaKnown RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 Q6ZS49 121 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 WDR86Q86TI4 376 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 OR8G5Q8NG78 346 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 MRGPRDQ8TDS7 321 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 TAF15Q92804 592 aaKnown RBP eCLIP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 WDYHV1Q96HA8 205 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 ABHD14BQ96IU4 210 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 WDR61Q9GZS3 305 aaKnown RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 SDF2L1Q9HCN8 221 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 CISD1Q9NZ45 108 aaKnown RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 IL17BQ9UHF5 180 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 VAX2Q9UIW0 290 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 DMRT1Q9Y5R6 373 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 TTC28Q96AY4 2481 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 CRYAAP02489 173 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 FGF7P21781 194 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 GPX4P36969 197 aaPredicted RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 ARG2P78540 354 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 UNQ6494/PRO21346Q6UXR6 183 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 PACRGQ96M98 296 aaPredicted RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 OR51I2Q9H344 312 aa10.25□□□□□ -0.77
CLIP3-201ENST00000360535 LIN7CQ9NUP9 197 aaKnown RBP10.25□□□□□ -0.77
CLIP3-201ENST00000360535 ZG16O60844 167 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 HNF1AP20823 631 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 MEOX1P50221 254 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 TFF3Q07654 80 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 LRRC75BQ2VPJ9 315 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 ACSM6Q6P461 480 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 IL22RA2Q969J5 263 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 TMEM204Q9BSN7 226 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 MPC1Q9Y5U8 109 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 A0A0U1RQK1 487 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 OR5B21A6NL26 309 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 J3QT63 122 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 IL18BPO95998 194 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 IFNA1P01562 189 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 RPL30P62888 115 aaKnown RBP10.24□□□□□ -0.77
CLIP3-201ENST00000360535 TMEM41BQ5BJD5 291 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 FFAR4Q5NUL3 377 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms