RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DPPA3Q6W0C5 159 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 ZNF808Q8N4W9 903 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 TPRX1Q8N7U7 411 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 C15orf54Q8N8G6 183 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 CD300LFQ8TDQ1 290 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 SFT2D1Q8WV19 159 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 C14orf79Q96F83 325 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 COA4Q9NYJ1 87 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 MSMPQ1L6U9 139 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 SLC25A24Q6NUK1 477 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 IGFL3Q6UXB1 125 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 CD177Q8N6Q3 437 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 ZNF525Q8N782 197 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 OR13A1Q8NGR1 328 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 LURAP1Q96LR2 239 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 CACNA1DQ01668 2161 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 SSTR5P35346 364 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 AKR1D1P51857 326 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 TLE4Q04727 773 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 LRRC29Q8WV35 223 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 NINJ1Q92982 152 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 EGLN1Q9GZT9 426 aa17.43■□□□□ 0.38
CCDC88B-203ENST00000359902 FAM90A26D6RGX4 464 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 RAB13P51153 203 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 BRWD1-AS2P59051 145 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 UBE2KP61086 200 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 SOHLH1Q5JUK2 328 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 OR2Z1Q8NG97 314 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 RSG1Q9BU20 258 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 HEATR1Q9H583 2144 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 SVILO95425 2214 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 KRASP01116 189 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 P0C879 139 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 HAGHQ16775 308 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 OR2B11Q5JQS5 317 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 LRP11Q86VZ4 500 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 SCGB1C1Q8TD33 95 aa17.42■□□□□ 0.38
CCDC88B-203ENST00000359902 DAOP14920 347 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 PRDX2P32119 198 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 G6PCP35575 357 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 ZNF816Q0VGE8 651 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 SPANXN5Q5MJ07 72 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 TUBA4BQ9H853 241 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 C17orf98A8MV24 154 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 ZNF83P51522 516 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 S100A12P80511 92 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 TNFRSF9Q07011 255 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 MZT1Q08AG7 82 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 MSMO1Q15800 293 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 ZNF474Q6S9Z5 364 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 RFESDQ8TAC1 157 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 RBKSQ9H477 322 aa17.41■□□□□ 0.38
CCDC88B-203ENST00000359902 CHD3Q12873 2000 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 FOLR2P14207 255 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 EGR1P18146 543 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 RPL35P42766 123 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 HBG1P69891 147 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 HBG2P69892 147 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 CATR1Q13166 79 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 BTNL3Q6UXE8 466 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 HIST1H2BAQ96A08 127 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 C12orf57Q99622 126 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 DCTN5Q9BTE1 182 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 HSPB7Q9UBY9 170 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 DUSP13Q9UII6 198 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 FAM215AQ9Y5M1 114 aa17.4■□□□□ 0.38
CCDC88B-203ENST00000359902 IGHV3-43A0A0B4J1X8 118 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 HBE1P02100 147 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 SRP19P09132 144 aaKnown RBP17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 IGHV3-43DP0DP04 118 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 EIF2S3P41091 472 aaKnown RBP17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 PAX5Q02548 391 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 ICAM4Q14773 271 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 RHEBQ15382 184 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 LRRC75BQ2VPJ9 315 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 ALKBH2Q6NS38 261 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 RPRMLQ8N4K4 120 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 CLDND2Q8NHS1 167 aa17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 RBMXL1Q96E39 390 aaKnown RBP17.39■□□□□ 0.38
CCDC88B-203ENST00000359902 TRAV1-1A0A0B4J248 108 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 C15orf65H3BRN8 121 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 PPIHO43447 177 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 ZNF737O75373 536 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 S1PR2O95136 353 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 NUBP1P53384 320 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 ZNF506Q5JVG8 444 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 TCTEX1D2Q8WW35 142 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 S100PBPQ96BU1 408 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 RPRMQ9NS64 109 aa17.39■□□□□ 0.37
CCDC88B-203ENST00000359902 USF3Q68DE3 2245 aa17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 SCAF4O95104 1147 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 CLDN1O95832 211 aa17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 OR8U8P0C7N1 319 aa17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 Q6ZS92 163 aa17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 ISOC2Q96AB3 205 aa17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 OR4C12Q96R67 309 aa17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 PSMG3Q9BT73 122 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 ZMAT5Q9UDW3 170 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 PUS1Q9Y606 427 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC88B-203ENST00000359902 DIDO1Q9BTC0 2240 aaKnown RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms