RNA–Protein interactions for RNA: ENST00000355233.9

PTPRD-201, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,251 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-201ENST00000355233 OR10J6PQ8NGY7 276 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 VSTM2LQ96N03 204 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 FAM234AQ9H0X4 552 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 ZFP64Q9NPA5 681 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 PXMP4Q9Y6I8 212 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 R4GN57 208 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 CEP192Q8TEP8 1941 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 ZNF716A6NP11 495 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 C9JCJ5 164 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 PLA2G10O15496 165 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 SRSF10O75494 262 aaKnown RBP4.29□□□□□ -1.72
PTPRD-201ENST00000355233 REG1AP05451 166 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 ZNF79Q15937 498 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 TMEM88Q6PEY1 159 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 LCN15Q6UWW0 184 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 RTN4RL2Q86UN3 420 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 FAM24BQ8N5W8 94 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 OR8B3Q8NGG8 313 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 LINC00052Q96N35 136 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 A0A1B0GTI1 187 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 DLL1O00548 723 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 FRS3O43559 492 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 CEBPDP49716 269 aaPredicted RBP4.29□□□□□ -1.72
PTPRD-201ENST00000355233 HBBP68871 147 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 HIST1H1AQ02539 215 aaPredicted RBP4.29□□□□□ -1.72
PTPRD-201ENST00000355233 RNASEKQ6P5S7 137 aaKnown RBP4.29□□□□□ -1.72
PTPRD-201ENST00000355233 TBC1D26Q86UD7 250 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 CIARTQ8N365 385 aaPredicted RBP4.29□□□□□ -1.72
PTPRD-201ENST00000355233 NXT2Q9NPJ8 142 aaKnown RBP4.29□□□□□ -1.72
PTPRD-201ENST00000355233 CBLN4Q9NTU7 201 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 KLK11Q9UBX7 282 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 PKIGQ9Y2B9 76 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 CACNA1DQ01668 2161 aa4.29□□□□□ -1.72
PTPRD-201ENST00000355233 LYL1P12980 280 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 ZNF25P17030 456 aaPredicted RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 S100A4P26447 101 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 POLR2IP36954 125 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 UBE2L3P68036 154 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 SHISA5Q8N114 240 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 RGP1Q92546 391 aaPredicted RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 DHCR7Q9UBM7 475 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 SPATA45Q537H7 98 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 TMEM108Q6UXF1 575 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 SLC16A13Q7RTY0 426 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 PIMREGQ9BSJ6 248 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 ISG20L2Q9H9L3 353 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 TBC1D29Q9UFV1 150 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 JPT1Q9UK76 154 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 TNFSF11O14788 317 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 GFRA3O60609 400 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 LEPROTL1O95214 131 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 RBM11P57052 281 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 LSM11P83369 360 aaKnown RBP eCLIP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 MAMSTRQ6ZN01 415 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 MSRB3Q8IXL7 192 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 TMEM123Q8N131 208 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 ARHGAP5-AS1Q96IT6 56 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 FOXB1Q99853 325 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 IGHV1OR21-1A0A087WYE8 117 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 TRGV8A0A0C4DH27 118 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 TMEM202A6NGA9 273 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 F2Z2F3 143 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 H3BRM9 83 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 NRG2O14511 850 aaPredicted RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 CD1BP29016 333 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 ACAA2P42765 397 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 C10orf128Q5T292 105 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 OSTCQ9NRP0 149 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 DOCK9Q9BZ29 2069 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 LRRK1Q38SD2 2015 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 LIPT2A6NK58 231 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 C22orf46C9J442 243 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 KLK10O43240 276 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 FGF16O43320 207 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 COL8A1P27658 744 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 CEACAM21Q3KPI0 293 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 SLC25A35Q3KQZ1 300 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 SLC35E4Q6ICL7 350 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 KIRREL2Q6UWL6 708 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 RFLNAQ6ZTI6 216 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 MMD2Q8IY49 270 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 OR8B12Q8NGG6 310 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 TMEM170AQ8WVE7 144 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 RPEQ96AT9 228 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 RASL11BQ9BPW5 248 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 SPXQ9BT56 116 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 GFRA4Q9GZZ7 299 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 FSCN3Q9NQT6 498 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 NGFP01138 241 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 IL4P05112 153 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 CCL7P80098 99 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 ZXDBP98169 803 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 ERV3-1Q14264 604 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 GFRALQ6UXV0 394 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 KISS1RQ969F8 398 aaPredicted RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 GUCD1Q96NT3 240 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 IL36BQ9NZH7 164 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 PSG11Q9UQ72 335 aa4.28□□□□□ -1.72
PTPRD-201ENST00000355233 SNRNP200O75643 2136 aaKnown RBP4.28□□□□□ -1.72
PTPRD-201ENST00000355233 J3QR06 171 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms