RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PIGYQ3MUY2 71 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 FLYWCH2Q96CP2 140 aaKnown RBP8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 SLC25A33Q9BSK2 321 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 G6PC2Q9NQR9 355 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 CLN8Q9UBY8 286 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 MED12Q93074 2177 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 A0A1B0GW15 77 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 ZDHHC8Q9ULC8 765 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 SOX21Q9Y651 276 aaPredicted RBP8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 AMY1AP04745 511 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 LINC01590Q5TEZ4 76 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF665Q9H7R5 613 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 WBP1LQ9NX94 342 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 USF3Q68DE3 2245 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 NACAE9PAV3 2078 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 LPAL2Q16609 132 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 SLC23A3Q6PIS1 610 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 CALHM1Q8IU99 346 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM252Q8N6L7 170 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 MISP3Q96FF7 219 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM70Q9BUB7 260 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 CLDN18P56856 261 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF506Q5JVG8 444 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 ACSM6Q6P461 480 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 GUSBP11Q6P575 273 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 TLNRD1Q9H1K6 362 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 SCGB1C2P0DMR2 95 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 PSG2P11465 335 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 ABHD14AQ9BUJ0 271 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 LSM11P83369 360 aaKnown RBP eCLIP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM92Q6UXU6 159 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 WFDC8Q8IUA0 241 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 BATF2Q8N1L9 274 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 OR11H4Q8NGC9 324 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 OR5R1Q8NH85 324 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 TAF15Q92804 592 aaKnown RBP eCLIP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 MS4A3Q96HJ5 214 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 MS4A7Q9GZW8 240 aaPredicted RBP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 OR1B1Q8NGR6 318 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 SPOCK3Q9BQ16 436 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 CLEC1BQ9P126 229 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF785A8K8V0 405 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 SNURFLB1AK76 121 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 DENND4AQ7Z401 1863 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 KLF7O75840 302 aaPredicted RBP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 EFNB1P98172 346 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 Q56UQ5 140 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 ZAR1Q86SH2 424 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 MOB3BQ86TA1 216 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 MBD1Q9UIS9 605 aaPredicted RBP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 LHFPL6Q9Y693 200 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 SPTAN1Q13813 2472 aaKnown RBP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF207O43670 478 aaKnown RBP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 NEURL1O76050 574 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 KBTBD11O94819 623 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 GOSR1O95249 250 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 RBP4P02753 201 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 LINC00114Q6XXX2 140 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 SMRP1Q8NCR6 262 aa8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 SNRNP40Q96DI7 357 aaKnown RBP8.92□□□□□ -0.98
CCDC88A-202ENST00000336838 ACAA1P09110 424 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 FAM157CP0CG43 387 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 CA7P43166 264 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 PLA2G2FQ9BZM2 168 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 RNF7Q9UBF6 113 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 NDUFA2O43678 99 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 PAGE4O60829 102 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 FAM209BQ5JX69 171 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 OR4P4Q8NGL7 312 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 DDA1Q9BW61 102 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 PRO1933Q9H354 126 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 OR51B2Q9Y5P1 312 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 MGST3O14880 152 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 REC114Q7Z4M0 266 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 QTRT1Q9BXR0 403 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 IGHV5-10-1A0A0J9YXX1 117 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 RCC1P18754 421 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 SRSF7Q16629 238 aaKnown RBP eCLIP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 ZPLD1Q8TCW7 415 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 ZCCHC14Q8WYQ9 949 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM242Q9NWH2 141 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 NCKAP5O14513 1909 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 A0A1B0GTI1 187 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 DAOP14920 347 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 LGALS7P47929 136 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 TNFRSF9Q07011 255 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 DHRS11Q6UWP2 260 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 GTF3C1Q12789 2109 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 HYAL3O43820 417 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 C1QL3Q5VWW1 255 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 UBALD1Q8TB05 177 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 SFRP2Q96HF1 295 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 WIPI2Q9Y4P8 454 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 GBGT1Q8N5D6 347 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 RAB1CQ92928 201 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 FOXQ1Q9C009 403 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 A0A1B0GW64 132 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 A0A1W2PQF6 199 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms