RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 OR52L2PQ8NGH6 319 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 RBM14Q96PK6 669 aaKnown RBP12.64□□□□□ -0.39
CLN3-201ENST00000333496 SLC25A33Q9BSK2 321 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 PECRQ9BY49 303 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 LIN7BQ9HAP6 207 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 OR2S2Q9NQN1 319 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 KCNIP1Q9NZI2 227 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 OR2F2O95006 317 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 AMY1AP04745 511 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 AMY2AP04746 511 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 SNRNP70P08621 437 aaKnown RBP12.63□□□□□ -0.39
CLN3-201ENST00000333496 SLC2A2P11168 524 aaPredicted RBP12.63□□□□□ -0.39
CLN3-201ENST00000333496 REG1BP48304 166 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 TRIQKQ629K1 86 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 THNSL2Q86YJ6 484 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 CAPSLQ8WWF8 208 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 PRSS22Q9GZN4 317 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 COMMD3Q9UBI1 195 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 KCNK7Q9Y2U2 307 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 WNK1Q9H4A3 2382 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 NBEAL1Q6ZS30 2694 aa12.63□□□□□ -0.39
CLN3-201ENST00000333496 TRBV6-6A0A0A6YYG2 114 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 IGHV1-3A0A0C4DH29 117 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 ZNF137PP52743 207 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 HTD2P86397 168 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 HIST2H2BDQ6DRA6 164 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 C11orf88Q6PI97 169 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 OR56B1Q8NGI3 324 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 GALMQ96C23 342 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 SOSTQ9BQB4 213 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 JPT1Q9UK76 154 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 VWFP04275 2813 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 RAB27BO00194 218 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 GAPDHP04406 335 aaKnown RBP12.62□□□□□ -0.39
CLN3-201ENST00000333496 PPP1CCP36873 323 aaKnown RBP12.62□□□□□ -0.39
CLN3-201ENST00000333496 TMEM95Q3KNT9 176 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 MZT2BQ6NZ67 158 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 CNIH2Q6PI25 160 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 KLHDC1Q8N7A1 406 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 DTX3Q8N9I9 347 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 OR6F1Q8NGZ6 308 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 ENKURQ8TC29 256 aa12.62□□□□□ -0.39
CLN3-201ENST00000333496 RTN4IP1Q8WWV3 396 aaPredicted RBP12.62□□□□□ -0.39
CLN3-201ENST00000333496 CHMP1AQ9HD42 196 aaPredicted RBP12.62□□□□□ -0.39
CLN3-201ENST00000333496 HMX3A6NHT5 357 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 YPEL1O60688 119 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 TMEM127O75204 238 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 FAM106CPP0CH98 169 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 RAB6AP20340 208 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 NDUFA5Q16718 116 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 MOB3BQ86TA1 216 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 ODF3L1Q8IXM7 274 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 WIPF2Q8TF74 440 aaPredicted RBP12.61□□□□□ -0.39
CLN3-201ENST00000333496 RBMXL1Q96E39 390 aaKnown RBP12.61□□□□□ -0.39
CLN3-201ENST00000333496 ZNF486Q96H40 463 aaPredicted RBP12.61□□□□□ -0.39
CLN3-201ENST00000333496 YPEL2Q96QA6 119 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 WNT10AQ9GZT5 417 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 RIMS4Q9H426 269 aaPredicted RBP12.61□□□□□ -0.39
CLN3-201ENST00000333496 ABRACLQ9P1F3 81 aa12.61□□□□□ -0.39
CLN3-201ENST00000333496 IGHV3-72A0A0B4J1Y9 119 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 SH2D7A6NKC9 451 aaPredicted RBP12.6□□□□□ -0.39
CLN3-201ENST00000333496 HPGDSO60760 199 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 IGKV1D-33P01593 117 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 IGKV1-33P01594 117 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 VSIG10L2P0DP72 767 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 EBI3Q14213 229 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 HERPUD1Q15011 391 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 ABCA11PQ4W5N1 156 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 LY6G6FQ5SQ64 297 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 MOB1BQ7L9L4 216 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 Q8N402 240 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 OR10R2Q8NGX6 335 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 IL1F10Q8WWZ1 152 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 PTX4Q96A99 478 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 RAB3CQ96E17 227 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 AKR1E2Q96JD6 320 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 CMSS1Q9BQ75 279 aaKnown RBP12.6□□□□□ -0.39
CLN3-201ENST00000333496 C11orf54Q9H0W9 315 aaPredicted RBP12.6□□□□□ -0.39
CLN3-201ENST00000333496 Q9N2K0 584 aa12.6□□□□□ -0.39
CLN3-201ENST00000333496 ZNF736B4DX44 427 aaPredicted RBP12.59□□□□□ -0.39
CLN3-201ENST00000333496 RGS13O14921 159 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 IL3RAP26951 378 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 IL18Q14116 193 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 HES1Q14469 280 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 LYG1Q8N1E2 194 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 C11orf44Q8N8P7 122 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 ABHD14AQ9BUJ0 271 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 C12orf4Q9NQ89 552 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 MFNGO00587 321 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 SCTP09683 121 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 SNRPBP14678 240 aaKnown RBP12.59□□□□□ -0.39
CLN3-201ENST00000333496 GNB3P16520 340 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 TMEM11P17152 192 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 HLA-DRB3P79483 266 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 HNF4GQ14541 408 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 ZFP69Q49AA0 526 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 PLET1Q6UQ28 207 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 IZUMO1Q8IYV9 350 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 EAF1Q96JC9 268 aaPredicted RBP12.59□□□□□ -0.39
CLN3-201ENST00000333496 PARP12Q9H0J9 701 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms