RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PARLQ9H300 379 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 FGF22Q9HCT0 170 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 CYTL1Q9NRR1 136 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 IGHV2-5P01817 119 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 WNT2P09544 360 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 ID4P47928 161 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 TMEM33P57088 247 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 IL15RAQ13261 267 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 ABHD17BQ5VST6 288 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 TMEM215Q68D42 235 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 LHFPL2Q6ZUX7 228 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 GTSF1LQ9H1H1 148 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 NTNG1Q9Y2I2 539 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 MRPS16Q9Y3D3 137 aaKnown RBP5.6□□□□□ -1.51
VPS35-201ENST00000299138 ETV2O00321 342 aaPredicted RBP5.6□□□□□ -1.51
VPS35-201ENST00000299138 TMEM155Q4W5P6 130 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 OR6X1Q8NH79 312 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 VCX2Q9H322 139 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 NPIPB7O75200 414 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 CAPZBP47756 277 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 LYZP61626 148 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 GAGE2BQ13066 116 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 GAGE2EQ4V326 116 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 MRGPRGQ86SM5 289 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 FAM219AQ8IW50 185 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 BOD1L2Q8IYS8 172 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 DEFB108BQ8NET1 73 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 GAGE2DQ9UEU5 116 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 HILPDAQ9Y5L2 63 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 A1L4Q6 167 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 MKRN2OSH3BPM6 223 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 CDC14BO60729 498 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 ALOX12BO75342 701 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 APOMO95445 188 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 SRSF6Q13247 344 aaKnown RBP5.59□□□□□ -1.51
VPS35-201ENST00000299138 CIRBPQ14011 172 aaKnown RBP5.59□□□□□ -1.51
VPS35-201ENST00000299138 ZBTB34Q8NCN2 500 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 CADM4Q8NFZ8 388 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 OR1L1Q8NH94 360 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 OR51E1Q8TCB6 317 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 ANXA10Q9UJ72 324 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 KLK13Q9UKR3 277 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 H3BTX0 84 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 H3BUT2 72 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 SH2D1BO14796 132 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 UBE2L6O14933 153 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 KBTBD11O94819 623 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 IGHEP01854 428 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 MST1P26927 711 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 PDPNQ86YL7 162 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 PLXDC1Q8IUK5 500 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 SVIPQ8NHG7 77 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 OXGR1Q96P68 337 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 WNT10AQ9GZT5 417 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 KLK15Q9H2R5 256 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 ZNF106Q9H2Y7 1883 aaKnown RBP5.59□□□□□ -1.51
VPS35-201ENST00000299138 IGKV1D-42A0A075B6H8 117 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 A0A1W2PP55 124 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 IGSF23A1L1A6 192 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 LINC01553A4QN01 128 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 TRDCB7Z8K6 153 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 K7ESM1 405 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 LEPROTL1O95214 131 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 TMEM240Q5SV17 173 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 RNASEH2CQ8TDP1 164 aaKnown RBP5.59□□□□□ -1.51
VPS35-201ENST00000299138 GALMQ96C23 342 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 KLHDC7BQ96G42 594 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 MESP1Q9BRJ9 268 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 CHST5Q9GZS9 411 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 ARID1BQ8NFD5 2236 aaPredicted RBP5.59□□□□□ -1.51
VPS35-201ENST00000299138 IGKV3-7A0A075B6H7 116 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 IGKV3OR2-268A0A0C4DH90 116 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 HOXB2P14652 356 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 CLDN2P57739 230 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 FHL1Q13642 323 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 ANKRD55Q3KP44 614 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 FBLN7Q53RD9 439 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 AAED1Q7RTV5 226 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 MARCH3Q86UD3 253 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 AMER3Q8N944 861 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 Q8WTZ3 238 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 C12orf49Q9H741 205 aa5.59□□□□□ -1.51
VPS35-201ENST00000299138 A6NNC1 897 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 C5orf67F2Z3F1 127 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 PLPP3O14495 311 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 PGA4P0DJD7 388 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 PGA5P0DJD9 388 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 DRD3P35462 400 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 PSG5Q15238 335 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 NRN1LQ496H8 165 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 MOGAT3Q86VF5 341 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 SAXO1Q8IYX7 474 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 OR5AN1Q8NGI8 311 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 ELSPBP1Q96BH3 223 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 FGF21Q9NSA1 209 aa5.59□□□□□ -1.52
VPS35-201ENST00000299138 TRAV8-6A0A0B4J262 113 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 J3QW42 95 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 BCAT2O15382 392 aaPredicted RBP5.58□□□□□ -1.52
VPS35-201ENST00000299138 IGHV3-9P01782 118 aa5.58□□□□□ -1.52
VPS35-201ENST00000299138 RND2P52198 227 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms