RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 HIST2H2BEQ16778 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.26□□□□□ -0.29
SHH-201ENST00000297261 OR4P4Q8NGL7 312 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BHQ93079 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BNQ99877 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BMQ99879 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 J3QR89 54 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 NDUFA2O43678 99 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 COX7A2P2O60397 106 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 SUCLG1P53597 346 aaKnown RBP13.25□□□□□ -0.29
SHH-201ENST00000297261 ABLIM2Q6H8Q1 611 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 MOB1BQ7L9L4 216 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 C10orf35Q96D05 121 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 ZNF488Q96MN9 340 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 HERPUD1Q15011 391 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 TRAT1Q6PIZ9 186 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 CISD2Q8N5K1 135 aaKnown RBP13.25□□□□□ -0.29
SHH-201ENST00000297261 SCCPDHQ8NBX0 429 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 OR10D3Q8NH80 312 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 MUCL1Q96DR8 90 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 ADCYAP1P18509 176 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 SRD5A2P31213 254 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 RPL24P83731 157 aaKnown RBP13.25□□□□□ -0.29
SHH-201ENST00000297261 MOB3AQ96BX8 217 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 BOD1Q96IK1 185 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 WASHC3Q9Y3C0 194 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 IGSF23A1L1A6 192 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 LRRC3CA6NJW4 275 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 FAM157CP0CG43 387 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 CT45A10P0DMU9 189 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 RBM11P57052 281 aaKnown RBP13.25□□□□□ -0.29
SHH-201ENST00000297261 PLXND1Q9Y4D7 1925 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 TTC28Q96AY4 2481 aa13.25□□□□□ -0.29
SHH-201ENST00000297261 DIDO1Q9BTC0 2240 aaKnown RBP13.24□□□□□ -0.29
SHH-201ENST00000297261 SPAARA0A1B0GVQ0 90 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 ERHP84090 104 aaKnown RBP13.24□□□□□ -0.29
SHH-201ENST00000297261 PCOLCEQ15113 449 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 PSG5Q15238 335 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 GINS3Q9BRX5 216 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 RSPO3Q9BXY4 272 aaPredicted RBP13.24□□□□□ -0.29
SHH-201ENST00000297261 SLC45A2Q9UMX9 530 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 RPL36A-HNRNPH2H7BZ11 118 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 PYY3Q5JQD4 70 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 LOXL4Q96JB6 756 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 HSD17B10Q99714 261 aaKnown RBP13.24□□□□□ -0.29
SHH-201ENST00000297261 CHRDL1Q9BU40 450 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 SHANK1Q9Y566 2161 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 BRS3P32247 399 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 LRRC75AQ8NAA5 344 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 ZNF738Q8NE65 137 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 CACNA1HO95180 2353 aa13.24□□□□□ -0.29
SHH-201ENST00000297261 PDE6DO43924 150 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 SCGB2A1O75556 95 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 CYC1P08574 325 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 CD99P14209 185 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 SUB1P53999 127 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHH-201ENST00000297261 SPCS3P61009 180 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 KIAA1644Q3SXP7 199 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 TAF15Q92804 592 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHH-201ENST00000297261 FAM122AQ96E09 287 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 PARLQ9H300 379 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 IGKV1D-43A0A0B4J1Z2 117 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 AGAP20933 346 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 COL10A1Q03692 680 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 ZP4Q12836 540 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 RTP5Q14D33 572 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 RTN4RQ9BZR6 473 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 LIFP15018 202 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 PAFAH1B2P68402 229 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 CTAG1AP78358 180 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 DEFB109BQ30KR1 87 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 FA2HQ7L5A8 372 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 GPR146Q96CH1 333 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 A0A0U1RQV5 110 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 LYPD3O95274 346 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 COX6A1P12074 109 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 NHLH1Q02575 133 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 ZNF506Q5JVG8 444 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 TMEM230Q96A57 120 aa13.23□□□□□ -0.29
SHH-201ENST00000297261 TECRQ9NZ01 308 aaKnown RBP13.23□□□□□ -0.29
SHH-201ENST00000297261 K7EQM0 130 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 CD5P06127 495 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 RAC3P60763 192 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 ZNF106Q9H2Y7 1883 aaKnown RBP13.22□□□□□ -0.29
SHH-201ENST00000297261 DEFA4P12838 97 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 PMELP40967 661 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 CCL20P78556 96 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 NDUFAF3Q9BU61 184 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 SH2D2AQ9NP31 389 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 OR1A1Q9P1Q5 309 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 GALNT14Q96FL9 552 aa13.22□□□□□ -0.29
SHH-201ENST00000297261 HELTA6NFD8 242 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 CDIPTO14735 213 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 SNRPCP09234 159 aaKnown RBP13.21□□□□□ -0.29
SHH-201ENST00000297261 SPATA45Q537H7 98 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 KIAA2026Q5HYC2 2103 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 LINC00114Q6XXX2 140 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 RCC1LQ96I51 464 aaKnown RBP13.21□□□□□ -0.29
SHH-201ENST00000297261 P2RX4Q99571 388 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 GSX1Q9H4S2 264 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms