RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 OR8G1Q15617 311 aa17.97■□□□□ 0.47
TRIM28-201ENST00000253024 TVP23CQ96ET8 276 aa17.97■□□□□ 0.47
TRIM28-201ENST00000253024 RTL8AQ9BWD3 113 aa17.97■□□□□ 0.47
TRIM28-201ENST00000253024 TNRC6AQ8NDV7 1962 aaKnown RBP17.96■□□□□ 0.47
TRIM28-201ENST00000253024 NKX2-8O15522 239 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 IGKV1D-33P01593 117 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 IGKV1-33P01594 117 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 SOX8P57073 446 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 MPC1Q9Y5U8 109 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 KLRC4-KLRK1H3BQV0 150 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 GALR2O43603 387 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-201ENST00000253024 SMPD2O60906 423 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 IGHV1-2P23083 117 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 RTP5Q14D33 572 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 ADIRFQ15847 76 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 ZNF766Q5HY98 468 aa17.96■□□□□ 0.47
TRIM28-201ENST00000253024 ZMAT5Q9UDW3 170 aaKnown RBP17.96■□□□□ 0.47
TRIM28-201ENST00000253024 FAM90A10PA6NDY2 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A18PA6NE21 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A16PA6NEW6 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A20PA6NIJ5 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A8PA6NJQ4 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A7PA6NKC0 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 OR5B21A6NL26 309 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A22PA8MWA6 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A12PA8MX19 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A5PA8MXJ8 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A23PA8MXZ1 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 ST8SIA5O15466 376 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 S1PR2O95136 353 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A15PP0C7V4 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A13PP0C7W8 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A14PP0C7W9 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A24PP0C7X0 464 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 RNF212Q495C1 297 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 VKORC1L1Q8N0U8 176 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 ZNF525Q8N782 197 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 TCTEX1D2Q8WW35 142 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 TREM2Q9NZC2 230 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 GLIPR1P48060 266 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 VWA1Q6PCB0 445 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 GPR61Q9BZJ8 451 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 SPRY4Q9C004 299 aa17.95■□□□□ 0.46
TRIM28-201ENST00000253024 RELNP78509 3460 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 C17orf98A8MV24 154 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 ZG16O60844 167 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 HAND1O96004 215 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 PEAR1Q5VY43 1037 aaPredicted RBP17.94■□□□□ 0.46
TRIM28-201ENST00000253024 SAXO1Q8IYX7 474 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 C5orf30Q96GV9 206 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 IFITM10A6NMD0 228 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 IGHV2-5P01817 119 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 CD59P13987 128 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 CD46P15529 392 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 BAXQ07812 192 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 RNPS1Q15287 305 aaKnown RBP17.94■□□□□ 0.46
TRIM28-201ENST00000253024 LHX4Q969G2 390 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 TMEM204Q9BSN7 226 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 NBASA2RRP1 2371 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 A0A1B0GU03 582 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 C12orf77C9JDV5 145 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 LY86O95711 162 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 SLC38A11Q08AI6 406 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 VHLLQ6RSH7 139 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 OR10D4PQ8NGN7 298 aa17.94■□□□□ 0.46
TRIM28-201ENST00000253024 GTF3AQ92664 365 aaKnown RBP17.94■□□□□ 0.46
TRIM28-201ENST00000253024 MRPS18CQ9Y3D5 142 aaKnown RBP17.94■□□□□ 0.46
TRIM28-201ENST00000253024 MAP1LC3B2A6NCE7 125 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 CDX4O14627 284 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-201ENST00000253024 TFF3Q07654 80 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 MAP1LC3BQ9GZQ8 125 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 TMEM9BQ9NQ34 198 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 KLF13Q9Y2Y9 288 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-201ENST00000253024 DFFBO76075 338 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 EIF2S3P41091 472 aaKnown RBP17.93■□□□□ 0.46
TRIM28-201ENST00000253024 ZNF497Q6ZNH5 498 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 LEAP2Q969E1 77 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 SDSLQ96GA7 329 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 DUSP13Q9UII6 198 aa17.93■□□□□ 0.46
TRIM28-201ENST00000253024 SH2D1BO14796 132 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 SS18L1O75177 396 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-201ENST00000253024 GCSAMLQ5JQS6 135 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 ZNF506Q5JVG8 444 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 KLF14Q8TD94 323 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-201ENST00000253024 RAB40CQ96S21 281 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 METTL1Q9UBP6 276 aaKnown RBP17.92■□□□□ 0.46
TRIM28-201ENST00000253024 PSG11Q9UQ72 335 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 LOC102723971A0A1B0GUV8 181 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 Q3ZCU0 254 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 FAM90A2PQ658T7 463 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 Q6ZS49 121 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 SNX22Q96L94 193 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 SLC39A9Q9NUM3 307 aa17.92■□□□□ 0.46
TRIM28-201ENST00000253024 IGHV3OR15-7A0A075B7D8 119 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 SMCO3A2RU48 225 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 MLNRO43193 412 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 MDH2P40926 338 aaKnown RBP17.91■□□□□ 0.46
TRIM28-201ENST00000253024 UBE2G2P60604 165 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 FOXF2Q12947 444 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 NRN1LQ496H8 165 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms